| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1093 |
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| Symbol | |
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| ID | 3968257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1398972 |
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| End bp | 1402448 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920161 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_526567 |
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| Protein GI | 90020740 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000168671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.12204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTATC GACAAGATAA AACAGAAGAA AACTTGCTTC ATCGCGGCTT ATTCAAGCGC
ACCGCGCTAG CGGCTTGTGT GATGGCTTTG TCTTCTTCAC CTTCATTTGC TCAGGAAGAG
GGTGCAGACT TAGAGGAAGT TATTGTTACA GGCACACGTG CAAACTTGCA GAATGCGCAA
GACATAAAGC GTGAAGCGGA TACATTTGTG GATGCGATTT CTGCAAAAGA TATCGGTTCG
TTGCCTGATC GAAGTGTATT GGAAGCTATT CAGCGTTTGC CTGGTGTATC GGTAGAGCGC
TTCGCTGGGC CTGATGACCC TGATCACTTT AGTGTGGAAG GTTCTGGTGC TGTTATTCGT
GGTATGACTC AAACCCGTTC AGAATTTAAT GGTCGCGACT CATTCACTGC GAACTCTGGT
CGAGGCCTTT CTTTCCAAGA CGTTTCTCCA GAGTTGATGG GGGGCGTTGA TGTATATAAA
AACCAAACTG CAGACATGAT AGAAGGCGGT ATTGGTGGAA CAATTAGCTT AAAGACACGT
AAGCCATTTG ATGCAGAGGG TAGAGTTCTT TCGTTTAGTG GCGATATGTC TCGTGGCGAT
ATGGCGAAAG AGTGGACGCC TACCGTTTCC GGTTTATTCA GTGACCGCTG GGATACAAGT
ATTGGTGAGT TTGGTTTACT TCTAAATGCT GCCGATTCAA GTTTACGTGG TCGCTCTCAT
GGTATTCAGT CTGATGCATA TGTGCAATAT AGCGCTGCAG ATATTCGCGG GGCTGAAGAG
TTTGTTGATG GTGACGGAAT TGTTTGGATG CCAAACGGTT CAAACTTGCT AGACAAAGAT
GATGACCGTC ACCGTTCCGG TTTTGCTGCA ACAGTACAGT GGGAAAATCC CGATGATACG
CTGCTTGCTA CTTTTGAATA CATTCGATCA GAAGCGACTT TGGCTTGGAC TGAGCGGGCT
CTGAAGTATC AGGGCGGTTA TTATGATGAA GACGCACAGA CAGATATTCG TCGTACGCGT
CCTGCGGATG CCTTCATCAA TAACAACATC CATGGTGTAA ACGAAGATAC CGAATTCCAA
TTTTCTAATG ACGGTGTTTT TGAAGCGGGC TTCCTAACCG ATACTGATGG TTGGCGAGTT
GCTGATGATA ATATCGATCA TGTTGCACGT GCATCATGGT CTGATAATGG TCAAGATCAA
TTCGGCCATA AATTCCAAAC TGACACTCGT GTTAAAAAAA CCAATACCTT AGTGGAAGAC
TTCTCTATTA ATTTGAAATG GTCTCCAACA GAGCAAATCG ATGTTGAGTG GGATGCTCAA
TACATTCAGG CTGAAAGCCG CGATGATGAT GTTGTTGTAA TGCTTGGTAT TTATGCTTTG
CAAGATTACG ACACGCGTGG TGATACTCCA ACGCTAAATA TTTACGAGCC TTGGGGTGGT
GTTCGTGATG CTGCTCGTGC ATCTGGTGAT GACCGTTTTG AAACCTATCC CACAGCAGCC
TTTACTGACT ATCCAGGGTT TAGTGGCGAT CCAGATGGGG ATGCTAACTA TTTCCAAGAC
TCCAATAACT ATTGGTGGCG TTCTGCGATG GATCACTATG AGCGCTCTGA AGGTGATTCG
TTTGCAACTC GTTTAGACGG TACTTACCAC TTTGAAGATG TTCCATTCGT GCGCTCCGTT
AAGGCTGGCG TTCGCTACGC TAAGCGAGAG CAGTTGGTGC GTGCGACTGG TTGGAACTGG
GGTAGCTTAG GCCCCGAGTT TTCAGGCGGC AATCGTGCAC ATTGGCTTGC CGAAACTCCT
GGTCAGCAGG ATGACTGGGA GCTGGTGGAT TGGAGTGATT TCCACGGTGG TGGTGTGGCG
AATATCCCTG GTGGGCAGTT AGCTCACGCT TCTGAGGATT TCGTTAAGAG TTTGGTTGCT
GGTCGCGGCG GTAGTGCAGA ATTAAGTGAT GCTGGTAATT GGCAACCTTA TCAAGATCGT
TCAAATGTTG ATGATGAATA CGGTCTGTTT TCTCCCGGTG AAATTTATAA AACAACTGAA
ACTAACAATG CGGCATACGT AAGAGTTGAT TTTGGCTCTG ATGACTTTGC AATGCGTTTC
AGTGGTAACG TGGGGTTGCG TTACGTGTCT CTAGATCGCG AGGCCCAAGG CTCCATTCAA
TTCCCAGATT TAGTACCCGA CCATGCAGTT CCTTCTGATT GGTCTATGCC TTTAGATCGT
GACGCAGTAG TTGCTTTTGT TGATACAGAG GTTGCGGCAA CAGGCGTGAT GGATAACATT
CCAGACCCTG GTAATGACCC AGATTCAGCT GAGTGGCAAG AGTATGAGGA CCGTGTAGTA
GCGATTGATC AAGAGTACGC TGCTGTTTTA TCTGCGAACG AATGGATTGG TGATGCTCGA
AATTGGTTGA CTCAAGAAGA GCGCAATTTT GGTAACGATC AGGAAGTGCT ATCTGTTCAA
GAAGCCAGCT TTGATATGTT ACTTCCTAGT TTGAACCTTA AAGTTGAAGT AACTGACGAT
CTCGTAGCTC GATTTGCAGT GTCAAAGGCC GTTGCGTTGC CTGATATGGA GCAAGTTAAA
AATCAAGCTG CTCTGGGTAA CTTGGAGGTT CAGGAAAGCA GATACGAAGT ACCTAATCCC
GATCCAGATG CTGCGCCAGA GCCTACCCCT ATTCGAACAG CAGACCTTCG TTTGCTAACC
GAGGCGTACG TGCCTGGGTG GACAGGAGAT GGTGGTAACC CACAATTGAA ACCAATGGAA
AGTGTTCAAT GGGATTTATC GTTGGAATGG TATTTCAGCG ATGTAGGCTC TTTGACAACA
AGTCTATTCC ATAAAGATTT GGAAAACTTC TTTATCTCTG GGGCATTTCC TAAGTCTTAT
ACCAATCCAT CGGGTGTGTC GCAGGTTGCT GACGTAACTC ATACTATTAA CTCGGGTACG
GGTAAAATGG ATGGTGTAGA AATAGCTTAT CAGCAATTCT ACGATATGCT ACCAGAGCCA
TTTGATGGAT TCGGTATACA AGCTACTTAT ACTTACATTG AGGCAAGTGG GATTCCTAAT
AATCAGCTTT CGCCAGATGA GGATGGGTTC ACCGATACGG TGAATGACAC AGGTGCTCGG
GTTGCTCTCG AGGATGTGCC TTTGCAAGGG CAGTCTAAGC ACACCGCTAA CTTCGTGTTA
ATGTATGAGA AGTATGATTG GAATGCTCGT TTAGCGTATA ACTGGCGTTC TAAGTATTTG
CTCACCACCC GCGATGTGAT CAGTAAGTAC CCATTATGGT ATGACGATCA TGGCCAACTT
GATGGTTCTG TCTTTTACGA CGTGAATGAT AACGTAACCG TGGGAGTTCA GTTGAATAAC
ATCACTAACT CTCAGTCTGA GACGATCATG ATTCTTGACG GCAAAGGAAC TGAGGCGGGG
CGCTCATGGT TTGTGCAGGA CCGCAGAGCC TCCTTGGTGG TACGAGCTAA TTTCTAA
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| Protein sequence | MVYRQDKTEE NLLHRGLFKR TALAACVMAL SSSPSFAQEE GADLEEVIVT GTRANLQNAQ
DIKREADTFV DAISAKDIGS LPDRSVLEAI QRLPGVSVER FAGPDDPDHF SVEGSGAVIR
GMTQTRSEFN GRDSFTANSG RGLSFQDVSP ELMGGVDVYK NQTADMIEGG IGGTISLKTR
KPFDAEGRVL SFSGDMSRGD MAKEWTPTVS GLFSDRWDTS IGEFGLLLNA ADSSLRGRSH
GIQSDAYVQY SAADIRGAEE FVDGDGIVWM PNGSNLLDKD DDRHRSGFAA TVQWENPDDT
LLATFEYIRS EATLAWTERA LKYQGGYYDE DAQTDIRRTR PADAFINNNI HGVNEDTEFQ
FSNDGVFEAG FLTDTDGWRV ADDNIDHVAR ASWSDNGQDQ FGHKFQTDTR VKKTNTLVED
FSINLKWSPT EQIDVEWDAQ YIQAESRDDD VVVMLGIYAL QDYDTRGDTP TLNIYEPWGG
VRDAARASGD DRFETYPTAA FTDYPGFSGD PDGDANYFQD SNNYWWRSAM DHYERSEGDS
FATRLDGTYH FEDVPFVRSV KAGVRYAKRE QLVRATGWNW GSLGPEFSGG NRAHWLAETP
GQQDDWELVD WSDFHGGGVA NIPGGQLAHA SEDFVKSLVA GRGGSAELSD AGNWQPYQDR
SNVDDEYGLF SPGEIYKTTE TNNAAYVRVD FGSDDFAMRF SGNVGLRYVS LDREAQGSIQ
FPDLVPDHAV PSDWSMPLDR DAVVAFVDTE VAATGVMDNI PDPGNDPDSA EWQEYEDRVV
AIDQEYAAVL SANEWIGDAR NWLTQEERNF GNDQEVLSVQ EASFDMLLPS LNLKVEVTDD
LVARFAVSKA VALPDMEQVK NQAALGNLEV QESRYEVPNP DPDAAPEPTP IRTADLRLLT
EAYVPGWTGD GGNPQLKPME SVQWDLSLEW YFSDVGSLTT SLFHKDLENF FISGAFPKSY
TNPSGVSQVA DVTHTINSGT GKMDGVEIAY QQFYDMLPEP FDGFGIQATY TYIEASGIPN
NQLSPDEDGF TDTVNDTGAR VALEDVPLQG QSKHTANFVL MYEKYDWNAR LAYNWRSKYL
LTTRDVISKY PLWYDDHGQL DGSVFYDVND NVTVGVQLNN ITNSQSETIM ILDGKGTEAG
RSWFVQDRRA SLVVRANF
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