Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1087 |
Symbol | |
ID | 3968251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1389354 |
End bp | 1390736 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637920155 |
Product | 3'-5' exoribonuclease, VacB and RNase II |
Protein accession | YP_526561 |
Protein GI | 90020734 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00818194 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.118313 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCCT TTGAAAAAAT TAAGAAAAGC CCTGCCTTAG GCTTTGTTAA GCACTTTCCA CGCGCGCACT TTATAGCCGT TGCGGCTTTA TCTGTGGTTC TCGTCGGCGC ATCGATGCTT CCTAGCGATA ATGCCTCGGC CAGTCGCCAC GAACAGGTAA TAGCCATCCC TGCACTAAGC CAGGTAGATG AGCAACCTAT TACACTACCT GTAGAGCCGC CTCCCCCAGA GGTTAAGCAA ACGCCCTATC GCATTTCAAA CCAAACGGTG CGCTCAGGGG ACAATCTATC CCTTATATTC AAACGTGCGG GCCTCAGCGA TAAGCATATG ATTGGCCTGC TTAATGGCAA TGCAGATAGC AAGCGGCTTA CCAAGCTGTT TCCGGGCCAT ACCTTAGAGT TCAGCATAAG CGATGAAGGC GAACTGGTTG AACTGCAGTA TGTGAAAAGC CGCCTAAATA AGCTGGTATA TACCAAGTTA GATTCGGGCT ACGACTTTGA AGAAATTGTT CGTCAGCCAG ATATCCATTC TGCTTCGCGC AGCGGCAAAA TAAGCACAAG CTTATTTGAT GCCGGCATGC AGGCCAATTT AGACGACCGC CTGATTATGG AATTTGCCAA CATATTCGGT TGGGACGTGG ATTTCGCCTT GGATATTCGC AAGGGCGACA CCTTTAAAGT GCTATACGAA GAGAAATTTT TAGACGGTGA AAAGCTGGGC AATGGAGAGA TACTTGCTGC GGAGTTTATT AACCAAGGCG AAGCGTTTCG CGCGGTGCGC TATGTAAACG AAGACGGCGA AAGCAGCTAT TACGCCCCAG ATGGCACCAG CATGCGCAAA GCATTTTTAC GCGCACCTCT CGACTTCCGC CGCATAAGCT CTAACTTTAA CCCCAAGCGC TTGCACCCTA TTACTAAAGT AGTTAGGCCT CACCGCGGCA CCGATTACGC CGCCGATAGA GGCACCCCCG TATGGGCGGC TGGCGCCGGC CGTGTTATCG CGTCGGGCTA CACCCAATAC AACGGCAACT ATATTGTTAT TCAACACGGC AACAATATTC AAACCAAATA CCTTCACCTG CATAAACGCT TCGTTAAAAA AGGCGACCGA GTAAAACAAA AACAACGCAT TGGCAGTGTA GGCTCTACCG GTTTGTCGCA AGCCCCACAT TTACACTACG AGTTTTTGTT AGACGGCGTG CACCGCAACC CGCGTACAGT TATCAACAAA CTACCTAAAG CAGATTCGAT AGCAAAATCT GAGATGGCGC GCTTCCAAAA CCAAACCCAA GTTTGGATAG CGGAACTTGA GCCAACCACA AACACCCGCT ATGCGGCATC AGATATTCTA AGCGAAAGTG CCGAGGCGAA GTCGTCGCTG TAA
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Protein sequence | MEAFEKIKKS PALGFVKHFP RAHFIAVAAL SVVLVGASML PSDNASASRH EQVIAIPALS QVDEQPITLP VEPPPPEVKQ TPYRISNQTV RSGDNLSLIF KRAGLSDKHM IGLLNGNADS KRLTKLFPGH TLEFSISDEG ELVELQYVKS RLNKLVYTKL DSGYDFEEIV RQPDIHSASR SGKISTSLFD AGMQANLDDR LIMEFANIFG WDVDFALDIR KGDTFKVLYE EKFLDGEKLG NGEILAAEFI NQGEAFRAVR YVNEDGESSY YAPDGTSMRK AFLRAPLDFR RISSNFNPKR LHPITKVVRP HRGTDYAADR GTPVWAAGAG RVIASGYTQY NGNYIVIQHG NNIQTKYLHL HKRFVKKGDR VKQKQRIGSV GSTGLSQAPH LHYEFLLDGV HRNPRTVINK LPKADSIAKS EMARFQNQTQ VWIAELEPTT NTRYAASDIL SESAEAKSSL
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