Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1078 |
Symbol | |
ID | 3968242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1378984 |
End bp | 1379472 |
Gene Length | 489 bp |
Protein Length | 162 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637920146 |
Product | pilin |
Protein accession | YP_526552 |
Protein GI | 90020725 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.18456 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCTA AAATTAAAGG GTTTACTCTT ATAGAATTAA TGATTGTTGT AGCCATTATT GGCATTCTTG CTGCAGTGGC GTTACCTGCT TATAGCCAGT ATGTGACGCG TGCAAAAATT GTAGATGGGT TGGCGCTCGT GCAAGAGTTA AAAGGCGATG TAAAAGAGTA TCATCGCTAC CACAATGTTT TCCCCGCGAC TAATGCGCAA GCGGGTATAC CCGCCGCCAA TAAGCTGCTT TCCAATTTCG TAACAGGGGT GGAGCTTGAA GGCGGTGCTT TTCATGTCAC CTTTGGGTTT AAAGCTGGTG CGAGTTTGGA TGGCAAAGTG TTAACGCTAC GTCCAGCCGT TGTGATGGGT AGCCCGCAAA GCCCTTATAC CTGGGTGTGT GGTTACGACG AGCCGGTAAT GGGCATGGTT GCCGTTGGTG AAAATAAAAC CGATATAGAT AAATCGCTGC TACCGAGTTC ATGTCGCGGC GTAATGTAA
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Protein sequence | MEAKIKGFTL IELMIVVAII GILAAVALPA YSQYVTRAKI VDGLALVQEL KGDVKEYHRY HNVFPATNAQ AGIPAANKLL SNFVTGVELE GGAFHVTFGF KAGASLDGKV LTLRPAVVMG SPQSPYTWVC GYDEPVMGMV AVGENKTDID KSLLPSSCRG VM
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