| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1054 |
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| Symbol | |
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| ID | 3967848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1353057 |
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| End bp | 1355870 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637920122 |
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| Product | RNAse R |
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| Protein accession | YP_526528 |
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| Protein GI | 90020701 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.947842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.977325 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTAACA AGGCTGTCCC GACAGACCCC CACGCACGCC GAGAGGCGGA AAAATACGAA
AACCCCATTG CTAGCCGCGA GCTAATTCTG GAATACCTAG AACAGGCCGA TGGCCCAATG
AGTCATCGCG CGTTGTGCCG CGCATTAAAG CTTACAGACG AAGACCATAT TGAAGCATTG
CGTCGCCGCT TAATCGCCAT GGAGCGCGAT GGTCAGCTGG TGTCTAATCG CAAGGGCGCC
TACGGCAGCG TAAACAAAAT GGACTTGATC CGCGGTAAGG TGCAAGGGCA TCGCGACGGG
TTTGGGTTTG TTATACCTAC CGATGGCAGC GACGACATTT ATGTATCTAA CCGTGAAATG
CGCAAAGTAT TTAGCGGCGA TGAAGTGTTG GTGCGCGCCG ATGGCTACGA CATAAAAGGT
CGCCGCGAAG GTGCCATTGT TGAGGTGTTA GTACACAACA CTCAAACAGT AGTGGGTAAA
TATTTTAATG AAGGCGGCAT ACATTTTGTG CGGCCTGATA ACCCCCGTAT AGGGCACGAC
ATTATGTTGC CCGCAGACCA AACTAACGGC GCAAAACCAG GGCAAATTGT TGAAGCCGAG
GTAGTGCGTC AGCCCGAAAG GCGCAGGCCG CCTTCTGGTT CAATTAAAGC CGTGTTGGGC
GACCATATGG CGCCGGGTAT GGAAATCGAC GTTGCAATTC GCTCTTACGA CTTGCCCCAC
GAATGGCCAA AGGCGCTCGA GGCCGAAATA GCCGCATATG GCCGTGAAGT TGAAGAGGCC
GACAAACTAA ACCGTCACGA CCTGCGCAAG TTGCCGTTTG TAACCATTGA CGGTGAAGAT
GCACGAGATT TTGACGATGC TGTTTATTGC GAGCCTCTTA AATCTGGAGG TTGGCGTTTA
TTTGTGGCCA TTGCGGATGT ATCTCACTAT GTTGCGGTAG GTAGCGAGCT AGATAAAGAA
GCAACTTCGC GCGGCAATTC GGTCTACTTC CCCGATTATG TATTGCCAAT GTTGCCAGAG
GTTCTTTCCA ATGGTTTGTG CTCGCTTAAC CCCGATGTAG ATCGGTTGTG TATGGTCTGC
GAAATGACCA TAAGCGCAAA AGGTAAAGTT AGTAGCTATG CATTTTTTGA AGCTGTTATG
CATTCCCATG CGCGCTTAAC TTATACTCAA GTTGGTAAAG TTTTGGCGGA GCGCGGCAAT
AAAAATAGCG GCGCACGCAA ACAGTACGCG AAGTTGTTGC CACAGCTTGA CGCACTGCAC
GACCTTTACA CAATATTCCG AGAACAGCGA GATTTGCGCG GCGCGATTGA TTTTGAAACA
AAAGAAACGC GCATATTGTT TGACGAAAAT CGAAAAATTA AAGACATTGT TCCCGTTGAA
CGCAATGATG CACACAAACT TATTGAAGAG TGCATGCTTG CCGCAAACGT TAGTGCTGCT
AAGTTTTTAT CTTCTTTAGA AGTGCCTGCA CTTTACCGTG TGCACGAAGG CCCAAAAGCA
GAAAAAATTG CATTACTGCA TGAATATTTG GGTGAGCTAG GCCTAAGTAT GCGCGGTAGT
GATGAAGTAA CTCCGCAAGA TTATCAATAT GTGCTGGAGC AAATAGAGGG CCGCCCAGAC
GCGCATATTA TCCAAATGGT TATGCTGCGC AGTATGAATC AAGCGGTATA TCAAGCGGAT
AATAAGGGCC ACTTTGGCTT GGCCTATTCC GAATACGCGC ACTTTACTTC GCCTATTCGC
CGCTACCCCG ATCTACTTGT GCATCGTGCA ATTCGCAGTG TTATCCGGTC TAACTTAGAT
ACCAATAAAG TTAAACGCGT AGAGCAAACC CCTGTTGTAG CGAAAGAAAC GTTTTACCCC
TATACGCCTG GTGATTTAGC GAGCTTAGGT GAGCAGTGCT CCACCACAGA GCGCCGTGCC
GATGAAGCAA CGCGCGACGT GATGAGCTGG CTAAAATGCG AATATCTACA AGATAAAGTC
GGCGATGAGT TTGAAGGTGT TGTAAGCGCG GTAACTGGCT TTGGTTTATT TGTAGAGCTA
AGTGATGTGT ATGTGGAAGG CTTGGTGCAC ATTACCGCAC TGCCGCAAGA TTACTATCAC
TTTGAACCCG CTCGACACCG CTTAGTAGGG GAGCGCACAC GCACCACCTT TAAGCTGGGC
GACTCGCTAA CTGTGCGAGT TGTTCGTGTG GATTTAGACG AGCGCAAAAT CGATTTTGAA
TTAATAGGTG CAAAAACTGG CAGAAAAGCA AAGCCTAAAG CCAGTAGCAA GGCCAAGGCA
ATGGCCAAAG ATTACGAAGC CGCGCAGGCG CGCAAGCCGC GTAAGCGCAA ACCAAAAGCG
AACTCGCCCG AGCCTGCAGC ACCTGTTAAA AAAGCGAGTG CCGCTAGCCG TATAATAGCC
GGTGTAAAAA ATGCTGCTGC AAACTTGCTT GGCCGCGGCA AAGCTAAAAA AGCCGAAGAG
GGCGCGCCAA TAAAAAAAGC TAAGCCCTCT GATACCAAGG CGACGCAAGA GCGAAAATCG
ACATCGGTTG AGAGCGCGAA TACGGGCGAA AAAGCAAAAC CCAAGTCGCG TGCGGGTAGA
AGTAGGCCCA AAGCTCGATC GAAAGCGCAG CCCAAAAAAG GGGCTAAAGG CGAAGCATCC
TCAGCGCCAA AGACTCGCGG GGCTTCCGCT AAAAAAACAG CTAAACCAAC GTCTAATCCT
AAGCCAGGTG CGAAAGCTGC GGCAAAACCT AAGGCAAAAA CAAAGCCTGC TGCTAAGGCT
CGCACCACCA AAAAACCGGC TGCTAAACGT GCAGCTCCTA GAAAATCAGA GTAA
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| Protein sequence | MSNKAVPTDP HARREAEKYE NPIASRELIL EYLEQADGPM SHRALCRALK LTDEDHIEAL
RRRLIAMERD GQLVSNRKGA YGSVNKMDLI RGKVQGHRDG FGFVIPTDGS DDIYVSNREM
RKVFSGDEVL VRADGYDIKG RREGAIVEVL VHNTQTVVGK YFNEGGIHFV RPDNPRIGHD
IMLPADQTNG AKPGQIVEAE VVRQPERRRP PSGSIKAVLG DHMAPGMEID VAIRSYDLPH
EWPKALEAEI AAYGREVEEA DKLNRHDLRK LPFVTIDGED ARDFDDAVYC EPLKSGGWRL
FVAIADVSHY VAVGSELDKE ATSRGNSVYF PDYVLPMLPE VLSNGLCSLN PDVDRLCMVC
EMTISAKGKV SSYAFFEAVM HSHARLTYTQ VGKVLAERGN KNSGARKQYA KLLPQLDALH
DLYTIFREQR DLRGAIDFET KETRILFDEN RKIKDIVPVE RNDAHKLIEE CMLAANVSAA
KFLSSLEVPA LYRVHEGPKA EKIALLHEYL GELGLSMRGS DEVTPQDYQY VLEQIEGRPD
AHIIQMVMLR SMNQAVYQAD NKGHFGLAYS EYAHFTSPIR RYPDLLVHRA IRSVIRSNLD
TNKVKRVEQT PVVAKETFYP YTPGDLASLG EQCSTTERRA DEATRDVMSW LKCEYLQDKV
GDEFEGVVSA VTGFGLFVEL SDVYVEGLVH ITALPQDYYH FEPARHRLVG ERTRTTFKLG
DSLTVRVVRV DLDERKIDFE LIGAKTGRKA KPKASSKAKA MAKDYEAAQA RKPRKRKPKA
NSPEPAAPVK KASAASRIIA GVKNAAANLL GRGKAKKAEE GAPIKKAKPS DTKATQERKS
TSVESANTGE KAKPKSRAGR SRPKARSKAQ PKKGAKGEAS SAPKTRGASA KKTAKPTSNP
KPGAKAAAKP KAKTKPAAKA RTTKKPAAKR AAPRKSE
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