Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1050 |
Symbol | |
ID | 3967804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1344090 |
End bp | 1347830 |
Gene Length | 3741 bp |
Protein Length | 1246 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637920117 |
Product | hypothetical protein |
Protein accession | YP_526524 |
Protein GI | 90020697 |
COG category | [S] Function unknown |
COG ID | [COG5412] Phage-related protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATCTG CAGCCACCAG CGCTGGCGCG CCCTTGCGCC TACAGGCCGC CGGAGCAAAG GTATCCTCGC CTCACGACCC AGAGGAAAAA GAAGCGGATA ACACTGCCGA TAAAGTAATG CGCATGGCCG TGCCAGACAG CCAAATTGCC AAGGTGCCAA CTAACACAGG TGGTGTATTT AGAAAGCTTT TTAGGCGCCC TGCTAAACCC AACAATGAAG AAAAAATAAG CCGTAAAGCA CCTAACGAAG AACCGCAGCT TAAAGAAGAT AAAGAGCTTC AGCGCAAAGA AGATAGAGAG CTTCAGCGGA CGGAGGATAA AGAGCTTCAG CGAAAAGGAG ATAGAGAGCT TCAGCGTGCG GAGGATAAAG AGCTTCAGCG CAAAGAAAAT GAAGAGCTTC AGCGTAAGGA AGATAAAGAG CTTCAACGAA AAGAAGATGA AAATCTTCAG CGTAAGGAAG ATAAAGAACT CCAGCGCAAA GAAGAGGACA TACAACGCGC CTCTCAGCCC GACAAAGAAT TAGCGCGCAA ACCAGAGCAG GAACAAGAAC CCAAAATAGC GCGCAAACCG CAGGTTGAAG AACAACAATT ACAGCGCAAA GCACACGAGC AACAAGAAGA GATTCAGCGC AAGGCAGAGG GAAGCCCCGA TGCAGGAAGT AACGTAACCG CCGAAATACG CAGCGCAATG GCTGGTGGTG ACCCATTGCC GCTTTCCGTA AGGCGGTTTA TGGAACCCAG ATTTAATGCC GACTTTAGCA ATGTAAAAGT GCACAGCAAT ACCCAGTCTG CCAATTTAAA TAAAAAGGTG AGCGCTAAAG CGTTTGCGGT TAAAAATCAT ATTTTCTTTG GTAAAGATCA ATACCAACCC GAGTCCGACG AGGGCAAACA TTTACTCGCT CACGAGCTAA CACATACTAT TCAACAGGGC GCCGCAAGCC AAGGGGATGG CGCTAATCAG GGCGGCGGTG CAAACGTGCA ACGCACCGTC GAAGACGAAG TGCAGCGTAA AGTTGCGGTA AATCAACGCA CCGCCCCCAA GGTGCAACGC CTAGGCGTGC GCGATGCGCT CGATTATTTT GCCGATCATG CCAACCACAT TCCCGGCTTT CGCATGTTTA CTATTGTACT GGGTGTAAAC CCGATTAATA TGCGCAGTGT AGATAGAACC CCAGCGAATA TTCTGCGTGC AGTGGTAGAG TTTATGCCTG GCGGTGCTTT CATTACCCGC GCGTTAGATA ATCACGGCGT ATTCGAGCGA GTGGGCAATT GGGTGTCGCA GCAATTGCGC AGTTTGGCCA TAACTGGCTC GCTTATTAGG TCTTCAATTA ATCGGTTTTT AGATTCCCTA AGCTGGCGCG ATATATTTAA TTTAAGCGGC GTTTGGCAGC GCGCAAAACG CATATTTACT GAGCCTATAG ATCGCATAAA AAGTTTTGTG CGCGGTTTAG TCAATGGCAT TATTCAGTTT GTAAAAGATG CGATTCTTAT GCCCCTAGCG CGGCTAGCAT CGCGCACCCG AGGTTGGGAT TTACTGTGCG CCGTACTACA GCGCAACCCC ATTACCGGTG AACCCGTAGC GCGTAATGCC GAAAACTTAA TTGGCGGCTT TATGACGTTA ATTGGCCAGC AAGAAGTGTG GCAAAACATA AAGCGGGCAA ATGCTATTGG GCGCGCGTGG GTGTGGTTCC AAGGTGCGCT CGCGGGGTTG CTCGGTTTTG TTCGCTCTAT TCCTAGTTTA TTTGTAAATG CATTTCGCGC CTTAGGTATT CGCGATTTAC TCGATGTGCC CGGCGCGTTT ATGCGTGTGG CACGCGTATT TGGCAGCTTT ATAGGTCGCT TTTTTAGTTG GGCTGGCGGC ACGGTAATGA ACTTGCTGCA AATTATTTTT GAGGTGGTTG CCCCTGGGGC TATGCCGTAT TTGCGCCGCG CTGGTGGCGC ATTCCGCTCT ATTATCCGCA ACCCTATAGG TTTTATTCGC AACCTTGTTA ATGCCGGCAA AATGGGCTTT AGGCGTTTTG CTACTAACTT TTTAACCCAC TTGCGTACCT CTTTGGTTAA CTGGCTTACA GGCACGCTAG GCGGCACGGG TGTGTATATC CCGCAGGCGT TTACCCCGCG TGAGCTAATA AAATTTGTAT TAAGTGTACT GGGCTTAACC TGGCAAAACG TGCGTACCAA GCTTGTGCGG GCGGTTGGTG AGCGGGCGGT TACGGCCATG GAAACAGGGT TTGAATTGGT GCGCACCCTT ATTACCGAAG GCCCCGCTGC TGCGTGGCAA AAAATATCAG AGGGGCTTAC CAATCTGCGT GAAATGGTTA TAGAGCAAAT AATGAGTTTT GTGCGCAGCA GAATTATTCA AGCCGCCGTA ACGCGTTTGC TTTCTATGTT GTCACCAGCG GGAGCGTTTA TTCAGGCGAT TATTGGTATT TACAATACCG TTATGTTTTT TGTCGAGCGT TTGCGCACCA TTATTCAAGT GGGTATGTCG TTTGTTAACT CTATAATGGC AATAGCCGCC GGCAGAATTA CCGCCGCTGC CGTGCGAGTA GAGCGCACAA TGGCAGGCAT GCTTACCTTA ATGATTAGCT TTCTTGCGCG CATTGCCGGA TTAGGGCGCG TGGCGACAGT GGTTACTCAA CTTATTAACC GCGTGCGGGC ACCGGTGGAT AGAGCGTTAG ATAGAGTGGT TGCTTGGATA GTGGCGCAAG CGCGCAGGTT AGGGCGATTT ATTCTGCAAG CGGGTGTGCC GCAAGACCCG CAACAGCGTG CAGTGCAAGG TATGAACGCC GCCGTTGCCG TTGTAAACCG CTTGCCGGGT AATCGAATTG GCGAAGCGGT TATCCACCCT GCACTGCGAG CAATAAAGGC GCGCTATGGG TTTAGTTTAT TGCAGCCAGA ATTGCGAGGG GGGCGCTGGT GGGTTATAGG TGAAATGAGC CCCAGACGCG CACAACAAAC ACAAAAAACA TCTACTTCTG CACCCGCTGC CGCTGCGGCC TCAGCCCTGC CAGACCAAGT GGATATACTT AACGCCAGCA ATGCTATTTT AATTCGCAAT TATTCGCGCT CTGCGCGCAC CGGTACATTT CAAGCGGCGA TATTTTCTAG TGCTGCAAAT TTAAGTAAGT TACGCCACGC CCCTCAAGCG GGGCAAACAG GCCCACAAAC GGTACCGGCG CCAGCGCCTA CAAATGTAGA TTACACAATA AGAGCAGCGA ATAGCCTATA CGGCCCGCCC TCCGCCTTCC AAGCCGTGGA CCGCAGCGAC CCAGACGAAG CGGCCAGTTA TTCTCGTACG CGAGAAGCGT TTCCAGAAGT GATGCGCGAA TGGTGGAAAA CTGAGCCGGC AGCCGATGCC GCTAGAATTA CCCAGTTAAG AAGCCTAGGG CTAGTGGACA TAGACCCAAG TGGCGGCTTA ATGCGCGGGG CAAGTAAGTG GAATTATATA TACTCGCAAT TAACCAATGC TGAAAAAAAC AGATTGGCTG GGCCTGTTAA TAAAGACAAT ATGGGTGCGC TATTGGATAG CTTCCCAGCT AGCAGACGTG ACACACTTCA AACCGCTTGG AAGCAGCGCT GGGCACAAGG CACACAAATT CATCACATAA AACCGGTTAA TTTCGGCGGC GATAATTCTA ACTTTATTCC ATTAAGTGCA GAAAAACACG TGGGCAGTAC CGGCGTTCAC CCGCGGTTTT GGACACCGCT TAAGCGCTTT TTAATGGGGT TACGGGGGTA A
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Protein sequence | MRSAATSAGA PLRLQAAGAK VSSPHDPEEK EADNTADKVM RMAVPDSQIA KVPTNTGGVF RKLFRRPAKP NNEEKISRKA PNEEPQLKED KELQRKEDRE LQRTEDKELQ RKGDRELQRA EDKELQRKEN EELQRKEDKE LQRKEDENLQ RKEDKELQRK EEDIQRASQP DKELARKPEQ EQEPKIARKP QVEEQQLQRK AHEQQEEIQR KAEGSPDAGS NVTAEIRSAM AGGDPLPLSV RRFMEPRFNA DFSNVKVHSN TQSANLNKKV SAKAFAVKNH IFFGKDQYQP ESDEGKHLLA HELTHTIQQG AASQGDGANQ GGGANVQRTV EDEVQRKVAV NQRTAPKVQR LGVRDALDYF ADHANHIPGF RMFTIVLGVN PINMRSVDRT PANILRAVVE FMPGGAFITR ALDNHGVFER VGNWVSQQLR SLAITGSLIR SSINRFLDSL SWRDIFNLSG VWQRAKRIFT EPIDRIKSFV RGLVNGIIQF VKDAILMPLA RLASRTRGWD LLCAVLQRNP ITGEPVARNA ENLIGGFMTL IGQQEVWQNI KRANAIGRAW VWFQGALAGL LGFVRSIPSL FVNAFRALGI RDLLDVPGAF MRVARVFGSF IGRFFSWAGG TVMNLLQIIF EVVAPGAMPY LRRAGGAFRS IIRNPIGFIR NLVNAGKMGF RRFATNFLTH LRTSLVNWLT GTLGGTGVYI PQAFTPRELI KFVLSVLGLT WQNVRTKLVR AVGERAVTAM ETGFELVRTL ITEGPAAAWQ KISEGLTNLR EMVIEQIMSF VRSRIIQAAV TRLLSMLSPA GAFIQAIIGI YNTVMFFVER LRTIIQVGMS FVNSIMAIAA GRITAAAVRV ERTMAGMLTL MISFLARIAG LGRVATVVTQ LINRVRAPVD RALDRVVAWI VAQARRLGRF ILQAGVPQDP QQRAVQGMNA AVAVVNRLPG NRIGEAVIHP ALRAIKARYG FSLLQPELRG GRWWVIGEMS PRRAQQTQKT STSAPAAAAA SALPDQVDIL NASNAILIRN YSRSARTGTF QAAIFSSAAN LSKLRHAPQA GQTGPQTVPA PAPTNVDYTI RAANSLYGPP SAFQAVDRSD PDEAASYSRT REAFPEVMRE WWKTEPAADA ARITQLRSLG LVDIDPSGGL MRGASKWNYI YSQLTNAEKN RLAGPVNKDN MGALLDSFPA SRRDTLQTAW KQRWAQGTQI HHIKPVNFGG DNSNFIPLSA EKHVGSTGVH PRFWTPLKRF LMGLRG
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