| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1033 |
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| Symbol | |
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| ID | 3967787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1321308 |
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| End bp | 1323032 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920100 |
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| Product | putative oxidoreductase chain |
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| Protein accession | YP_526507 |
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| Protein GI | 90020680 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0731446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGATC CTTTTTTAAT TAAAAAAACC ACCAAAAAAT TTGACGCTAT TGTTGTCGGC
TCTGGCATTT CTGGTGGATG GGCTGCCAAA GAACTGTGTG AGCGCGGCTT AAAAGTTTTG
CTGGTAGAGC GCGGCCGCGC AGTGCGCCAC CAGAAAGATT ACGAAGGCGA ATTTAAAGCA
CCGTGGGACC TGCCACACAG GAACCAAGTG GATTACAAGT TAGTACAAGA CCAGCATCAC
GTGCAACGCA AGTGCTACGC CTTTAATGAT GCGACCAAAC ACTTTTTTGG CAACGACCGC
GACTACCCCT ACATAACCAA AGAGGGCACA GGCTTTGATT GGATACGAGG CAATCAACTC
GGTGGCCGCT CATTGCTATG GCACCGTCAA TCCTTCCGCT GGGGAGAAAT AGACTTTGAA
GAAAACCTGC GCGACGGCAA CGGTTGCGAC TGGCCAATTC GCTATAAAGA CTTAGAACCG
TGGTACTCCC ATGTAGAAAA ATTCGCGGGT ATTTCAGGTA GCGTAGAAAA CATACCCACC
TTGCCCGATA GCGAATTTTT GCCACCGTTT GAGATGAACG CTGCCGAAAA ATATGCAAAA
AAAGCTATCG AAAAAAAATA CCCTCATATG AAATTCATAC AGGGTCGCTG TGCGCACTTA
TCTGAGCCCA CCCAATTTTT TCTAGATCAA GGCCGCGGTA AATGTATGGC CCGCAATCAG
TGCCAGCGCG GCTGCTCTTT TGGTGCATAC TTTTCTACCC TTAGCTCCAC GTTGCCTGCG
GCGATCAAAA CAAACAACTT AAGCATTGCC TGCAACAGTG TTGTACACAG TGTTATTTAC
GATGAGAAAA GCGGCAAAGC AACCGGTGTA AATGTAATAG ACGAAGAAAC ATTAGAAACT
CGCGAATATT ACGGCGGCAT GATTTTTCTG TGCGCCTCAA CACTTGGCAC CACCCAAATA
ATGCTTAATT CTAAATCCAA AGCTTTTCCA AATGGTATTG CCAACTCTTC GGGCGTGCTC
GGTCACTACT TGATGGATCA CATTTATAAT TCTAGCGCTT ACGGTGTGTT AGAAGGCTTT
GAAGATGACT ACTACAAAGG GCAGCGCCCA ACAGGCCCTA TTATTCCTCG GTTTAAAAAC
TTAAAGAAAA ATAGCGAGAA GTTTAATCGC GGTTATTTTT TACGCGGCGG CGCGGTTCGG
CCAGTTACCT ATAGCTCCCC CGATGACAAA ACCTTTGGCG TGGAATTAAA AAACAAGCTA
CAAAAACCAG GGCCTTGGAT TCTTCATTTC GGCGGCTCAG GCGAAATGAC ACCCAAGTAC
GAAAACATGG TTAGCTTACA CCCAACCAAA ACCGACAAGT GGGGCATTCC ACTATTAGTT
TTCGATTGTA AATTCACCGA AAACGACAAG CTGATGATGG AAGACATGGC CGATACTGCT
GCAGAAATTC TCACAACAAT TGGCTGCAAG CATGTCACTA AAGATATTAG CGATGCGCCC
CCCGGCTTAG CCATTCACGA AATGGGCACC GCACGCATGG GCCGCGACCC CAAAACCTCG
GTATTAAATG GCAACAACCA ATGCCACGAT GTACCCAACC TATTTGTAAC AGACGGTGCA
TGTATGGCCT CTACTGCTCA CCAAAACCCA TCACTTACCT ATATGGCAAT TACCGCGCGC
GCAGCTGCCT TTGCTGCAGA GCAATACAAA AATAAAGCGC TCTAA
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| Protein sequence | MIDPFLIKKT TKKFDAIVVG SGISGGWAAK ELCERGLKVL LVERGRAVRH QKDYEGEFKA
PWDLPHRNQV DYKLVQDQHH VQRKCYAFND ATKHFFGNDR DYPYITKEGT GFDWIRGNQL
GGRSLLWHRQ SFRWGEIDFE ENLRDGNGCD WPIRYKDLEP WYSHVEKFAG ISGSVENIPT
LPDSEFLPPF EMNAAEKYAK KAIEKKYPHM KFIQGRCAHL SEPTQFFLDQ GRGKCMARNQ
CQRGCSFGAY FSTLSSTLPA AIKTNNLSIA CNSVVHSVIY DEKSGKATGV NVIDEETLET
REYYGGMIFL CASTLGTTQI MLNSKSKAFP NGIANSSGVL GHYLMDHIYN SSAYGVLEGF
EDDYYKGQRP TGPIIPRFKN LKKNSEKFNR GYFLRGGAVR PVTYSSPDDK TFGVELKNKL
QKPGPWILHF GGSGEMTPKY ENMVSLHPTK TDKWGIPLLV FDCKFTENDK LMMEDMADTA
AEILTTIGCK HVTKDISDAP PGLAIHEMGT ARMGRDPKTS VLNGNNQCHD VPNLFVTDGA
CMASTAHQNP SLTYMAITAR AAAFAAEQYK NKAL
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