| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1028 |
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| Symbol | |
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| ID | 3967782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1313031 |
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| End bp | 1316120 |
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| Gene Length | 3090 bp |
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| Protein Length | 1029 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920095 |
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| Product | pantoate-beta-alanine ligase |
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| Protein accession | YP_526502 |
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| Protein GI | 90020675 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATACA CCCAACTACA AACCCTAACC AACTACAGCT TCCTAAAAAG CGCATCACAC
CCGCAGGAAC TTGTAGAAGA AGCCAAAATA CTCGGCTACC ACGCCCTCGC CATTACCGAC
GAGTGCTCGC TGGCGGGTAT TGTAAAAGCG CATGTCGCAG CAAAAGAACT CAACCTAAAG
CTACTAGTAG GTAGTTATTT TGAATTAACC AACGGCTTTA AAATAATCGC CATCGCCCCC
AACCGACAAG CCTACGCAGA ATTATCGGGT TTTATTTCTT TAGCGCGACG ACGTGCAAGT
AAAGGCGAGT ATGAGGCGCA TTTATCCGAT TTACGGTTTC GTTTACAACA GTGTTTAATT
ATTTGGCTGC CGTATTTTAA CAACCATATT AGCGATGTAG ATGTAACCAC CCTCGCAACC
GCATTTAAGC AACGGCTGTG GATAGGCGTT AGCCATACAC TTATCGCCGC AGAACAACGA
TTATTCAGCC ACTTAAATAA ATTAGCGAAC GCACTACATG TGCCCCTAGT GGCAAGCGGG
CTTACCTATA TGCACAATAA AAATTGTAAA CCCTTGCTAG ATATATTAAC CGCCATTAGA
GAGAACACAC CTATCCAACA ATTGGGAACA CGCTTACACA GCAATGCAGA AGTGAACTTA
AAACCGCTGC ATGAACTTAA TCAACTTTAC CCCGAAGCGT TAATCCAGCA AACGCAGGTT
ATTGCACAAC TTTGTAATTT CTCTTTAGAT GAGTTGCGTT ACCAATACCC AAAAGAACTT
GTGCCCAGCA ATACAACGCC AATAGCCCAC TTAAAAAAAC TGGTTAAAGA AGGGGAAGCC
AAGCGCTGGC CACAAGGCAC CCCCGAACAC GCGCAAAAAA TTATTGCTAT GGAGCTAGGC
TTAATTGAGG AGATGCAATA CGAATATTAT TTTTTAACCG TACACGACAT AGTGCACTTT
GCTCGCAGTA AAAATATTTT ATGCCAAGGG CGAGGCTCGG CCGCCAATTC GGTGGTGTGC
TACTGCTTGT TTATTACCGA GATTGCCCCC GGGCAAATTA ACGTTTTATT TGAGCGGTTT
ATCTCTAAAG AGCGCAATGA ACCGCCAGAT ATTGATGTAG ACTTTGAACA CCAGCGCCGC
GAAGAAGTAA TTCAGTATAT TTATCAAAAA TATGGTCGTG AGCGCGCAGC TTTAGCCGCA
ACAGTTATAA CCTACCGCAG CCGCAGCGCC ATTCGCGATG TAGGTAAAGC TATGGGCCTA
GAGGCAGGCC TTGTGGGGCA ATTAGCAAAA TCGCTAGCTT GGTGGGATAG AACTGGCGAT
TTAATTAAAC GCATGGAGTC TTTTGGCCTT AACCCAGAAA CACAAAAAAC CATGCAGCAT
TTTTTTGCCT TAGTGCAACA GATACTTGGC TTTCCTCGCC ACTTATCGCA GCACGTGGGT
GGTTTTATTA TTACGCAGGA TAAGGTCAGC GATCTTGTGC CGCTAGAAAA TGCCAGCATG
CCCGACCGCA CTATTATTCA GTGGGATAAA TACGACATAG AAGCCATGGG CTTACTAAAA
GTGGATGTGT TAGCGTTGGG TATGCTTACC GCTTTGCGTA AATCATTAGA AACCGTTAGC
CAGTACGACG CAGCAGTTTA CTCCCTCGCC ACTATTCCAC GTGAAGATCC AGCCACTTAC
GCCATGCTAA GTAAAGGCGA TAGCATTGGT GTGTTTCAAG TGGAATCGCG CGCGCAAATG
TCTATGCTGC CGCGCTTACG ACCTAAGTGC TTTTACGATT TGGTTATTGA AATTGCCATT
GTAAGGCCAG GGCCTATTCA AGGCGACATG GTTCACCCTT ATTTACGCCG GCGCGACGGC
ATTGAAGAGG TGCACTACCA GAACGATAAA ATAAAAAGCG TATTGGAGCC CACCCTCGGC
ATTCCTATTT TTCAGGAGCA AGCTATTCGC TTGGCCATGG TAGCTGCAGA TTTTAGCGGC
GGCGAAGCAG ACCAATTGCG GCGGGCCATG GCAAGCTGGG GCAAGAATGG TAGCCTACTA
AAATTCGAAG ATAAATTTAT TCAAGGTATG CTAAACAACG GCTACCCACT TGATTTTGCT
CACCGTTTAT TCGAGCAAAT AAAAGGCTTT GGCGGTTATG GGTTTCCTGA ATCACACTCG
GCCAGTTTTG CTTTATTGTG CTACGCCTCA TCGTGGCTAA AATGCCACCA CCCAGCGGCA
TTTTATTGCG CACTACTTAA TAGCCAACCA ATGGGGTTTT ACTCTGCCTC GCAACTTATT
CAAGATGCTC GTCGCCATAA AGTCGTTGTA TTACCGGTAG AAGTTAATGC TAGCGGTTAC
GAAAGCCACG TAGTATTAAC CAACCACAAT ACATCGGCGC CCCCCAATAT TATTCAGCTT
GGTTTGCATA TGATTAAGGG CTTAAGCATA CTCACCGCAG AGCGCATTGT GCTTGCTAAA
GGCGATAAGC CGTTTACTAC ATTAAAAGAG TTAAGCCTAC GCGCACAACT TAGCAGCGCC
GATTTACAAC TGCTGGCATC CGCCGATGCA TTGCACAAAC TTACCGGCAA CAGACACAAC
AGTCGTTGGC AGGCTGCCGC CCTTATGCCG CACAGCCCAC TGCTAGACGG CGCCGAACTA
GAAGAAGACG CACTTAATAC TCCTGCGCCC AGTATAGAAA AAAATATTCA AACTGATTTT
AACAGCACGG GGCTTTCTTT GCGGCTACAC CCTATGGCTT TGCTGCGCGC CCAGCAGCCC
TTTAACCGCT GTAAAAAACA AAGCGAATTG GCAAGTATAC ACAACGGTGG CTTTGCCCAA
GTTGCCGGGC TAGTAACCGG CAGGCAGCGC CCAGGCACAG CCAAAGGCAC ATTGTTTTTA
ACCCTAGAAG ACGAAACCGG CAATATAAAT ATTGTAGTGT GGACCAGCAC CCAAGAGCGC
TGCCGCCAAG CCTTACTTAC CGCCAAGCTA TTATTGGTTA AAGGCCGCTT AGAAACGAAA
GACAACGTCA CCCATATTAT TGCAGGGCAA ATGTTTGATT ACTCGCACAT GCTAAGTGAA
TTTGATATTA AGTCGCGCGA CTTTCATTAA
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| Protein sequence | MQYTQLQTLT NYSFLKSASH PQELVEEAKI LGYHALAITD ECSLAGIVKA HVAAKELNLK
LLVGSYFELT NGFKIIAIAP NRQAYAELSG FISLARRRAS KGEYEAHLSD LRFRLQQCLI
IWLPYFNNHI SDVDVTTLAT AFKQRLWIGV SHTLIAAEQR LFSHLNKLAN ALHVPLVASG
LTYMHNKNCK PLLDILTAIR ENTPIQQLGT RLHSNAEVNL KPLHELNQLY PEALIQQTQV
IAQLCNFSLD ELRYQYPKEL VPSNTTPIAH LKKLVKEGEA KRWPQGTPEH AQKIIAMELG
LIEEMQYEYY FLTVHDIVHF ARSKNILCQG RGSAANSVVC YCLFITEIAP GQINVLFERF
ISKERNEPPD IDVDFEHQRR EEVIQYIYQK YGRERAALAA TVITYRSRSA IRDVGKAMGL
EAGLVGQLAK SLAWWDRTGD LIKRMESFGL NPETQKTMQH FFALVQQILG FPRHLSQHVG
GFIITQDKVS DLVPLENASM PDRTIIQWDK YDIEAMGLLK VDVLALGMLT ALRKSLETVS
QYDAAVYSLA TIPREDPATY AMLSKGDSIG VFQVESRAQM SMLPRLRPKC FYDLVIEIAI
VRPGPIQGDM VHPYLRRRDG IEEVHYQNDK IKSVLEPTLG IPIFQEQAIR LAMVAADFSG
GEADQLRRAM ASWGKNGSLL KFEDKFIQGM LNNGYPLDFA HRLFEQIKGF GGYGFPESHS
ASFALLCYAS SWLKCHHPAA FYCALLNSQP MGFYSASQLI QDARRHKVVV LPVEVNASGY
ESHVVLTNHN TSAPPNIIQL GLHMIKGLSI LTAERIVLAK GDKPFTTLKE LSLRAQLSSA
DLQLLASADA LHKLTGNRHN SRWQAAALMP HSPLLDGAEL EEDALNTPAP SIEKNIQTDF
NSTGLSLRLH PMALLRAQQP FNRCKKQSEL ASIHNGGFAQ VAGLVTGRQR PGTAKGTLFL
TLEDETGNIN IVVWTSTQER CRQALLTAKL LLVKGRLETK DNVTHIIAGQ MFDYSHMLSE
FDIKSRDFH
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