| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1014 |
|---|
| Symbol | |
|---|
| ID | 3967768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1295551 |
|---|
| End bp | 1296969 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920081 |
|---|
| Product | arabinan endo-1,5-alpha-L-arabinosidase |
|---|
| Protein accession | YP_526488 |
|---|
| Protein GI | 90020661 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000194163 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTTT GTCGAAAACT CTATCAACTA GCTACAACAG TAGTACTTCT ATGTATGTGC
GCATTTGCCA ATGCCCAGTT ATCTAATGGC GTGTACTCCA TTACTTCTAA GTTAAGTGGT
AAGCCTATAG AAATAACGGG GGCGTCTACG GCGGCTGGCG CAAATGTAAT TCAGTGGGCG
AATAATGGCG GTGATCATCA AAAATGGATT GTCACTCACG AAGGCAATGG CGACTACTCC
ATAATTAACT TGTTAAGTGG TATGGCGCTG GAGGTGTTTG ATTTTTCCAC GGCAGATGGC
GGCAATGTTG TGCAGTATGA TTTTTGGCAT GGCGACCCGC AGTTGTGGAC TTTAAGCAGC
CAGGGCAATG GCTATTATGC CGTGCTAAAT AAACACAGCG GCAAAGCGTT AGATTTGTAT
GGTTTTGATA CGTCTAACGG CGCGAATATT GCGCAATGGG CCTTTTGGGG CGGGGACCCG
CAGCAGTGGC AATTTACCAA AATCGCCAAT GTAGGTGCGC CGCCAGTAGA TACATCTACC
ACCAACGGTG CAACCAACCA CTGGTCCTTA ACCGGTAATC TAGTGACTCA CGACCCCACA
ATGGCCTACG AAAACGGCTC ATGGTGGTTG TATCAAACCG GCGAGGGAAT TTACGGTAAG
TATTCAGCCA ATGGTTTGGC GTGGGATGGC TTACCTTCTG TGTTTCCCAA TGGTTTAAGT
TGGTGGAAGA CCTATGTACC CGGCCAGTCG AACAACGATG TATGGGCGCC TGATGTACGC
ACTTATAATG GGCGGGTTTA TTTGTACTAT TCCATCTCTA CTTTTGGCTC GCGTGTATCT
GCCATTGGTT TGGCGTCGGC ATCGAGTTTG GCTGCGAGTG ATTGGCAGGA CCACGGCTTA
GTAATTAATA CCACCTCATC TAGCGATTGG AATGCGATCG ACCCAGATTT AGTGGTCGAT
GAGCATGGCA ACCCTTGGTT AACAATGGGA AGTTGGAACA GCGGTATTAA AGTGATGCGC
TTGAACCCCA TTACCATGAA GCCAATTGGC ACACTTTATT CTATTGCGCA AAAGGGCGGC
GGTATTGAAG CGCCTTCTAT TGTGTATCGC CGTGGGTATT ACTATTTATT TGTTTCTATC
GGCAAATGCT GTGCGGGCGT AGATAGCACC TATCAAATTG CTTACGGGCG CTCTACAAGT
ATTACCGGCC CTTATTTGGA TAAGAACGGC AACGATATGA TGAGTGGTGG TGGCAGTATT
TTAGATGCGG GCAACAACGT GTGGGTTGGC CCTGGTGGGC AAGATATTAT TAACACCGAT
GTCATTGTGC GCCACGCGTA CGATGCCACA GATGCAGGCA CACCTAAGAT GATTATTAGT
ACCTTGAATT GGGATGCTAA TGGATGGCCG AAATACTAG
|
|---|
| Protein sequence | MNLCRKLYQL ATTVVLLCMC AFANAQLSNG VYSITSKLSG KPIEITGAST AAGANVIQWA
NNGGDHQKWI VTHEGNGDYS IINLLSGMAL EVFDFSTADG GNVVQYDFWH GDPQLWTLSS
QGNGYYAVLN KHSGKALDLY GFDTSNGANI AQWAFWGGDP QQWQFTKIAN VGAPPVDTST
TNGATNHWSL TGNLVTHDPT MAYENGSWWL YQTGEGIYGK YSANGLAWDG LPSVFPNGLS
WWKTYVPGQS NNDVWAPDVR TYNGRVYLYY SISTFGSRVS AIGLASASSL AASDWQDHGL
VINTTSSSDW NAIDPDLVVD EHGNPWLTMG SWNSGIKVMR LNPITMKPIG TLYSIAQKGG
GIEAPSIVYR RGYYYLFVSI GKCCAGVDST YQIAYGRSTS ITGPYLDKNG NDMMSGGGSI
LDAGNNVWVG PGGQDIINTD VIVRHAYDAT DAGTPKMIIS TLNWDANGWP KY
|
|---|
| |