| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0995 |
|---|
| Symbol | |
|---|
| ID | 3965120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1276856 |
|---|
| End bp | 1278271 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637920062 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_526469 |
|---|
| Protein GI | 90020642 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00000812271 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGTATTC GCAGCAGCCT ATTGTCCTCC GGTCTGTTAA AATGCACGCC TTTTTTGGGG
GATGATCGTT TGGCAAGTGA AGTTCGGGCT GTAAGCTCGC TAGCATTGTT GTATGCGTTT
AGGATGTTGG GCCTATTTAT GGTGCTGCCT ATTCTCGTGC TTTATGCCGG CGACTACCCA
GGTGCAACGC CTTTTACTTT GGGGTTGGCA CTTGGTATTT ATGGTTTAAC TCAAGCTGTC
TTTCAAATTC CCCTTGGTTT GCTCTCAGAC TTTATTGGCC GCAAACCCGT TATTATTGCA
GGCTTGTTGG TGTTTTGTGC CGGCAGTGTG CTTGCAGGTA CGGCCGAATC GGTAGAGTGG
TTAATTATTG GTAGAGCCCT ACAAGGCAGT GGCGCCATTG CAAGTACCAT TATGGCCATG
GTGGCCGACC TTACCTCTGA GCAAAACCGC ACCAAAGCCA TGGCCGCTAT TGGCGCTTCT
ATTGGGTTGT CGTTTTCGCT GGCGATGATT TTAGGGCCTA CGGTGGGCGC GTTTGGTGGC
TTATCGGTGG TGTTTTATTT TTCTGCGGTA CTGGCGCTTA TTGGTGTGTG CATTGTGATC
TTTTTAGTGC CTCGCCCGCC GCAAGTAGGG CACTCTCACC GCGACAGTGG CGCGGTGCCA
GAGCTTATTA TGCAAACCCT TAAAAACACC GAGCTGCTGC GTTTAAATTT CGGTATTTTT
ACTTTGCACG CGTTGCTAAT GGCCTGTTTC TTGGCAATTC CTGTTGTAGT GGAAAGTAGT
TTAGGTATTC CTCGGGGTAA GCATTGGCAG GTTTACTTGC CAATGTTGGC TATCGCGTTG
GGCGTAGTGC TGCCGCTCAT TATGGTTGCT GAGCGCAATC GCAAGTTAAA GCCCGTTTTC
TTGTTTGCCA TTGCTGTGCT TGTTGTTTCG CAAGCTAGCT TAGCGGTTGT TCCGTTGGCG
GGCTGGCCGT TTTTATTGCT AATGCTGCTG TTTTTCGTGG CGTTTAACCT GCTGGAGGCT
TGTTTGCCTT CGTTGGTCAG TAAGCTTGCA CCTGTAGGTG CCAAAGGCAC GGCGATGGGG
GTGTATTCCA CTAGCCAGTT TTTAGGGGCG TTTATTGGCG GGTCTGTTGG AGGTTACATT
TTTACCCTGT GGGGTATGGA TGGCCTGTTC GCTGCTGGCG CGCTTTGCGC TGCCGCTTGG
TTCGCAGTAG CTGCATCTAT GCGCACTCCG CGCCACTTAA GCAGCATGTG TATGGGCGTT
CAGCGTGAAA GCGGCGCACA GTGTGCGATT GATGTACTCA CATTGCCGGG CGTAGTAGAG
GCTCTGTGGG TCGAGCAGGA AGGTTTGTTG TATTTAAAAG TAGATAATCG AGAGCTGGAT
AGGTCCCAGT TGGATGATTT GATTGCGGCG CAATAA
|
|---|
| Protein sequence | MGIRSSLLSS GLLKCTPFLG DDRLASEVRA VSSLALLYAF RMLGLFMVLP ILVLYAGDYP
GATPFTLGLA LGIYGLTQAV FQIPLGLLSD FIGRKPVIIA GLLVFCAGSV LAGTAESVEW
LIIGRALQGS GAIASTIMAM VADLTSEQNR TKAMAAIGAS IGLSFSLAMI LGPTVGAFGG
LSVVFYFSAV LALIGVCIVI FLVPRPPQVG HSHRDSGAVP ELIMQTLKNT ELLRLNFGIF
TLHALLMACF LAIPVVVESS LGIPRGKHWQ VYLPMLAIAL GVVLPLIMVA ERNRKLKPVF
LFAIAVLVVS QASLAVVPLA GWPFLLLMLL FFVAFNLLEA CLPSLVSKLA PVGAKGTAMG
VYSTSQFLGA FIGGSVGGYI FTLWGMDGLF AAGALCAAAW FAVAASMRTP RHLSSMCMGV
QRESGAQCAI DVLTLPGVVE ALWVEQEGLL YLKVDNRELD RSQLDDLIAA Q
|
|---|
| |