| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0988 |
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| Symbol | |
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| ID | 3966230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1263294 |
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| End bp | 1265444 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920055 |
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| Product | glycogen operon protein |
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| Protein accession | YP_526462 |
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| Protein GI | 90020635 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.25479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAG GTTATAGCGT TTCCGAAGGC CGTTCTTTTC CTATGGGCGC TACGGTAAGT
GCGCAAGGCA CCAATTTCGC AATATTTTCC GAGCACGCAG AAAAAGTAGA GCTGTGTTTA
TTCGATGAGA TGGGGCAGAC GGAAACTGCG CGCATTATGT TGCCGGGTAA TACTGACCAT
GTGTGGCATG GGTTTGTTGA GGGGGTTCAC GCTGGCGCAT TATACGGTTA CCGAGTGTAC
GGCCCCTACG AGCCGCAGCG CGGCCATAGG TTTAACCCCA ATAAACTACT TTTAGACCCC
TATGCCAAGC GAATTGACGG CGCTTTTCAT TGGTCGAGCA TAATGTACGG CTATGATGCA
GATAATCCTC GGCAAGACTT GGTGAAAGAT AAGCGCGATA ACAGCAGGGA TATGCCGAAA
TGTGTTGTTG TTGCGCCACT AAGCTTGAGT GATAAAGAAC GAATTAGTGA AGCTCGACCT
CAAGTGCCGT GGCACAAAAC AATTATTTAC GAAACGCACG TAAAAGGTTT TACCCAGTTG
AATCTGGCTA TCCCTTCAAG CGCAAGGGGC ACGTTCGCAG GGTTAGCTCA CCCAGAAAAT
CTAGCTTATA TAAAAGAGTT AGGCGTAACG GCAATTGAAT TACTTCCTGT ACACGGTTTT
ATCGATGAGT CCTTTCTTAC GGCCCAGGGT TTGTCTAACT ATTGGGGCTA TAATTCACTG
CACTTTTTTG CCCCTCACTC TGGTTACTTG AATGATGGTG ACCCAGCTGA ATTTCGACAT
TTTACCCAAG CCGCACACGA AGCCGGGCTA GAGGTTATTT TAGATGTGGT TTATAACCAC
ACTTCAGAAG GTAACCATTT GGGACCAACG CTTTCGTTTC GCGGTATAGA TAACGCAAGC
TACTATTGTT TACAGGCGCA GGATTCGCGT TTTTATGTGA ACGATACCGG TTGCGGCAAC
ACGTTAAACT TAAAGCACCC GCGCGTTTTA CAAATGGTTA TGGACAGCCT GCGGTATTGG
GTAACGGAAA TGGGAGTAGA CGGCTTCCGT TTCGATTTGG CAACCGTACT TGGTAGAGAG
TCGCACGGTT TTGATCCTGG TAGCGGCTTT TTCGATGCTA TCAAGCAAGA CCCAGTGTTA
GCTTCTGTGA AAATGATTGC AGAACCTTGG GATATTGGCC CTGGCGGCTA CCAGCTTGGT
AATTACCCTA CGGGTTGGTC TGAATGGAAT GACCGCTACC GCGATACCTG TCGGCGTTTC
TGGCGAGGTG ACCCCGGTAT GCTGCCAGAG TTTGCGCGAC GCATTCACGG CTCCAGTGAT
TTGTTTGAGC ACTCCGGTAG AAAGCCCTCT AGCAGTGTGA ACTTTATAAC TAGTCACGAT
GGTTTTACTT TGGCCGATTT AGTGAGCTAT AAAAATCGCC ACAATGAAGC CAATAACGAA
CAAAATAGCG ACGGTCATCA CTCGAATTTT AGCGAAAATT ATGGCGTTGA AGGCGAAACA
GATGATGATG CTATTTTGTA TGTACGTGAA CGACAAAAGC GCAATTTTCT CGCCACACTG
TTTTTATCGC AAGGCACGCC CATGTTGTTG GCTGGCGATG AGCTGAGCCG TTCGCAAAAA
GGCAACAACA ATGCCTACTG CCAAGATAAC GAAATAAACT GGTTGGATTG GCAAGCCTTA
ACCAAAAAGG AAATTGCCCT AAGCAAATTT GTATCGCATT TAATTAAAGT GCGAAGCAGC
TCACCACTAT TAACTTCGCA ACGTTATATT CATAAGCCCG ACGAGCCAGA CGGAAAAATA
AGCTGGTGTG TAAACTGGAT AAACAGTTAC GGCGAGCCCA TGAAAGATGC TCAATGGGCG
GAGCAGCACG CGCATTGTCT CGGCTGGGTG TTAGAAAAAA TTCCTGTGGC GGAAGATTCA
GATAAAAAAT CAGAGCGCCT ATTAGTTCTA TTTAATTCAG GTAATGACGA CGTGTTGTTT
CGCTTGCCTG AAGATGAAAA TGTAATTGGT TGGAAATGCT TGGTCGATAC ACGGTTTATT
GATGGCCAAG GGGTTCCCTC ATGTTACGAG CCAAGAGGAG AGGTGCCACT AATGCATAAA
TCTCTTTGCT TGCTTAAAGC GTTGTTCGAT GGTCAGGATG AGCGTGACTA G
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| Protein sequence | MSEGYSVSEG RSFPMGATVS AQGTNFAIFS EHAEKVELCL FDEMGQTETA RIMLPGNTDH
VWHGFVEGVH AGALYGYRVY GPYEPQRGHR FNPNKLLLDP YAKRIDGAFH WSSIMYGYDA
DNPRQDLVKD KRDNSRDMPK CVVVAPLSLS DKERISEARP QVPWHKTIIY ETHVKGFTQL
NLAIPSSARG TFAGLAHPEN LAYIKELGVT AIELLPVHGF IDESFLTAQG LSNYWGYNSL
HFFAPHSGYL NDGDPAEFRH FTQAAHEAGL EVILDVVYNH TSEGNHLGPT LSFRGIDNAS
YYCLQAQDSR FYVNDTGCGN TLNLKHPRVL QMVMDSLRYW VTEMGVDGFR FDLATVLGRE
SHGFDPGSGF FDAIKQDPVL ASVKMIAEPW DIGPGGYQLG NYPTGWSEWN DRYRDTCRRF
WRGDPGMLPE FARRIHGSSD LFEHSGRKPS SSVNFITSHD GFTLADLVSY KNRHNEANNE
QNSDGHHSNF SENYGVEGET DDDAILYVRE RQKRNFLATL FLSQGTPMLL AGDELSRSQK
GNNNAYCQDN EINWLDWQAL TKKEIALSKF VSHLIKVRSS SPLLTSQRYI HKPDEPDGKI
SWCVNWINSY GEPMKDAQWA EQHAHCLGWV LEKIPVAEDS DKKSERLLVL FNSGNDDVLF
RLPEDENVIG WKCLVDTRFI DGQGVPSCYE PRGEVPLMHK SLCLLKALFD GQDERD
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