| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0987 |
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| Symbol | |
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| ID | 3966229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1261070 |
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| End bp | 1263259 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920054 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_526461 |
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| Protein GI | 90020634 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0160232 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAAGCA TTACTCCAGA AATAATAAAA GAAATTGTTC AAGGCGAATA TCACGATGTT
TTTGCTGTTC TCGGTCCTCA CGCTCAAAAA AATGGGTATG TAATACGTGC ATTTTTCCCT
GCAGCTAAAA CGTTGCAGGT AAAGAGTAAG TTAGACGGCT CGGTACTTGC TGAGGCTGTA
ATGCGCAATG AAGAGGGCTT TTTCGAGGCA AATTGTAATT GTAGTGAAAA GCCAAGCTAT
TATTTTACGG TTGGTTATGG CGACAAAGAA TTTGATGTAG AAGATATGTA TCGCTTCGGC
AGTACGATAC CTGAGGGAGA CCTATATCTT TTTGGGGAGG GGACTTACGA ACAGGCATAC
CGCCTTTTTG GTGCGCACCC AACAGAGGTT GACGGTGTGC CTGGTTGCAG GTTCACTGTG
TGGGCGCCAA ATGCGAAAAC CGTCGCCGTG GTAGGTGATT TTAACTTTTG GCAAGGCCGT
GCACATGTCA TGCGCAAACA TATACCTTCG GGTATTTGGG AATTGTTTAT TCCTTACCTT
GGCGAGGGTG CGCTATACAA GTACGAAATT AGAAATCATA GTGGCGATTG CTTGCCTCAC
AAGGCCGACC CTTACGGTTT CGCAGCGCAA AAGCCACCAG AGCAGGCATC GGTTGTATCG
GTGTTAGATA GATACGAATG GAACGATGCT GAATGGTTTG CAAAAGCAAA TAACTGGACG
CAACGCGATC GTCCCATTTC TATTTACGAA GTGCATTTGG GCTCGTGGAA GCGCGTAGTT
GAAGAAGACA ATCGTTACCT TAGCTATAAA GAATTAGCCG CAGATTTAAT TCCCTATGTG
AAATCAATGG GGTTCACTCA TATACAGCTA ATGCCAATAA GCGAATTTCC ATTTGATGGT
TCATGGGGTT ATCAGCCTGT TGGACTTTAT GCGCCGACTA GCCGCTTTGG CTCGCCAGAA
GATTTTAAGT ACTTCGTAGA TTGCTGCCAC CAAAATGATT TAGCCGTTTT AATAGATTGG
GTGCCTGGGC ACTTCCCTAC GGATAGCCAC GGTTTGGGCT TGTTTGATGG CACACCACTG
TATGAGCATG CTGACAGTCG ACAAGGGTTT CACCCAGACT GGAACACCTA CATATATAAC
TATGGGCGCC ATGAAGTTAA ATCGTTTTTG ATGGCGAACG CTTTGTTCTG GTTGGAGCAG
TATCATATCG ATGGTCTTCG TGTTGATGCT GTCGCCTCTA TGCTCTACTT AGACTACAGT
AGGAAGGACG GCGAGTGGCT ACCAAATTCC TACGGTGGCA GAGAAAACTT AGAAGCAATA
GATTTTTTGC GGCTGGTTAA CGAAAGGGTC TATAAACGTT TTCCTCACGC AATGATGGTG
GCAGAAGAAT CCACGGCTTG GCCGGGCGTT TCTAGCCCAA CCTCTTGTGG TGGTCTAGGC
TTTGGTTACA AATGGAATAT GGGCTGGATG AACGACAGTT TGCAGTACAT TAGCAAAGAG
CCGATCCACA GGCAGTACCA CCATCACGAC ATGACATTTA GTTTGCACTA TGCCTTTAGT
GAAAACTTTG TTTTACCGCT AAGCCACGAT GAAGTGGTGC ACGGTAAGCG TTCGCTGCTG
GGGCGCATGC CCGGGGATGC TTGGCAGCAA TTTGCAAATT TGCGCGCCTA TTACGCGTTT
ATGTGGACGC ACCCCGGCAA AAAACTGCTG TTTATGGGGG GCGAGTTTGC TCAGGGTATG
GAATGGAACC ACGACACAAG CTTGAGTTGG CACCAGCTAG AAATAGATTA TCACAGTGGA
ATCCAAACTC TTGTTAAATC GTTAAATCGA CTCTATACAG ATGTGCCTGC GCTCTACAAA
GAAGATTGTA TGTCGAGCGG ATTTGAATGG GTTGAAGCGG ACGATAGACA TAACTCCATC
TTTGCTTTTT TAAGGAAGGC AAAAGACGAA AAGCCAGTGT TGGTGGTGGC CAACTTTACA
CCTGTAGCGA GAGAAGGCTA TCGGGTAGGC GTGAATCAAC CGGGTTATTA CCGTGAATTA
TTAAACACAG ATAGTGAGTT GTTTGGCGGA AGTAATTTAG GTAATGAAGG TGGGGTACAC
AGCGAAGAGA TTGCATGGCA CCAGCGGCCG CAATCTGTTT CTATTAATAT TCCTGCATTA
GCAGCGGTGG TTTTTCAGCT GGACTCATAA
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| Protein sequence | MLSITPEIIK EIVQGEYHDV FAVLGPHAQK NGYVIRAFFP AAKTLQVKSK LDGSVLAEAV
MRNEEGFFEA NCNCSEKPSY YFTVGYGDKE FDVEDMYRFG STIPEGDLYL FGEGTYEQAY
RLFGAHPTEV DGVPGCRFTV WAPNAKTVAV VGDFNFWQGR AHVMRKHIPS GIWELFIPYL
GEGALYKYEI RNHSGDCLPH KADPYGFAAQ KPPEQASVVS VLDRYEWNDA EWFAKANNWT
QRDRPISIYE VHLGSWKRVV EEDNRYLSYK ELAADLIPYV KSMGFTHIQL MPISEFPFDG
SWGYQPVGLY APTSRFGSPE DFKYFVDCCH QNDLAVLIDW VPGHFPTDSH GLGLFDGTPL
YEHADSRQGF HPDWNTYIYN YGRHEVKSFL MANALFWLEQ YHIDGLRVDA VASMLYLDYS
RKDGEWLPNS YGGRENLEAI DFLRLVNERV YKRFPHAMMV AEESTAWPGV SSPTSCGGLG
FGYKWNMGWM NDSLQYISKE PIHRQYHHHD MTFSLHYAFS ENFVLPLSHD EVVHGKRSLL
GRMPGDAWQQ FANLRAYYAF MWTHPGKKLL FMGGEFAQGM EWNHDTSLSW HQLEIDYHSG
IQTLVKSLNR LYTDVPALYK EDCMSSGFEW VEADDRHNSI FAFLRKAKDE KPVLVVANFT
PVAREGYRVG VNQPGYYREL LNTDSELFGG SNLGNEGGVH SEEIAWHQRP QSVSINIPAL
AAVVFQLDS
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