| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0984 |
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| Symbol | |
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| ID | 3966226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1257131 |
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| End bp | 1258120 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920051 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_526458 |
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| Protein GI | 90020631 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.00112037 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00529034 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGAGTG CTGTGAATGA ATTTTTGACT CCACGTCACA TTGATGTAAC CGAATTGGGT
CCAACTCGCG CTAAGGTGGT TTTAGAACCG CTTGAGCGTG GCTTCGGTCA CACCTTGGGT
AACGCATTGC GTCGTATTCT CCTGTCTTCA ATGCCAGGTT GTGCTGTTAC CGAAGTTGAA
ATTGACGGGG TGCAACACGA ATACAGTGCC ATTGAAGGTG TACAGGAAGA TGTGATCGAA
ATTCTTCTGA ACCTTAAAAA TGTCGCTGTT GTAATGCACG GTAAGGATCA AGCAGTTCTT
AGCCTTAGTA AGCAAGGCCC TGGTGCTGTT ACCGCCGGCG ATATTCAAGT TGATCACGAT
ATTGAAATTA AAAATCCTGA GTTAGTAATA GCTAACATCA CTTCAGATAC GTCGTTAAGC
ATGCGTTTAA CCGTATCTCG TGGTCGCGGC TATCAGCCAG TTGACGCTCG CGCAACTGAC
GAAGATGAAA CTCGTGCTAT TGGTCGTTTG CAATTAGACG CATCTTTCAG CCCAGTACGC
CGCTTGGCCT ACTCTGTTGA AAGTGCTCGC GTAGAGCAGC GTACCGACTT GGATAAGTTA
GTTTTAGATT TGGAAACAAA CGGAACTATC GATCCAGAAG AGGCGATTCG TCGTGCAGCA
ACTATCTTGC AACAGCAGTT AGCGGTATTC GTTGACTTAG AAGGCGAGAA AGAAGCTGAG
CCTGAGCAGA AAGAAGATCA GATTGATCCT GTCTTACTGC GCCCAGTAGA CGATTTAGAG
CTAACAGTAC GTTCTGCGAA CTGTTTAAAA GCTGAAAATA TCTACTACAT AGGTGACTTG
ATCCAGCGCA CAGAAGTTGA GCTGCTTAAG ACTCCTAACT TAGGTAAAAA GTCACTTACT
GAAATCAAAG ATATCCTTGC TTCGCGCGGT CTATCTTTGG GTATGCGTTT GGAGAACTGG
CCACCGGCTA GCTTGAAAAA CAACGATTAA
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| Protein sequence | MQSAVNEFLT PRHIDVTELG PTRAKVVLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVQHEYSA IEGVQEDVIE ILLNLKNVAV VMHGKDQAVL SLSKQGPGAV TAGDIQVDHD
IEIKNPELVI ANITSDTSLS MRLTVSRGRG YQPVDARATD EDETRAIGRL QLDASFSPVR
RLAYSVESAR VEQRTDLDKL VLDLETNGTI DPEEAIRRAA TILQQQLAVF VDLEGEKEAE
PEQKEDQIDP VLLRPVDDLE LTVRSANCLK AENIYYIGDL IQRTEVELLK TPNLGKKSLT
EIKDILASRG LSLGMRLENW PPASLKNND
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