| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0981 |
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| Symbol | rpsM |
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| ID | 3966223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1255660 |
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| End bp | 1256016 |
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| Gene Length | 357 bp |
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| Protein Length | 118 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920048 |
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| Product | 30S ribosomal protein S13 |
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| Protein accession | YP_526455 |
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| Protein GI | 90020628 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0099] Ribosomal protein S13 |
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| TIGRFAM ID | [TIGR03631] 30S ribosomal protein S13 |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000000000395911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00390271 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCTCGAA TAGCTGGTGT CAACATACCA GATCATAAAC ATGCCGTCAT CTCCCTGACC
TACGTCTATG GGATTGGTCG CACTAAGGCA AAGCAAATAT GCTCCGCCGC AGGCGTTGCT
GAGTCAACCA AAATTGGTGA CTTAAGCGAA GAGCAGGTTG ATACGATTCG TAATGAAGTT
GCAAAGTTCA CTGTAGAAGG TGATTTGCGT CGTGAAGTAT CAATGAACAT TAAGCGTTTG
ATGGATTTGG GCTGCTACCG CGGTCTTCGT CATCGTCGTA ATTTGCCAGT GCGTGGGCAA
CGTTCTAAAA CGAACGCCCG TACACGTAAG GGACCACGTA AGCCTATCAA ACGATAG
|
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| Protein sequence | MARIAGVNIP DHKHAVISLT YVYGIGRTKA KQICSAAGVA ESTKIGDLSE EQVDTIRNEV
AKFTVEGDLR REVSMNIKRL MDLGCYRGLR HRRNLPVRGQ RSKTNARTRK GPRKPIKR
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