| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0975 |
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| Symbol | rplR |
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| ID | 3966217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1252366 |
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| End bp | 1252716 |
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| Gene Length | 351 bp |
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| Protein Length | 116 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920042 |
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| Product | 50S ribosomal protein L18 |
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| Protein accession | YP_526449 |
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| Protein GI | 90020622 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0256] Ribosomal protein L18 |
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| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.000749489 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000035288 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAACGCTA AGAAACAGTC AAGAATACGT CGCGCGCGAC GAGCTCGAGC AAAAATGAAA
GAGCTCGGTG TGAGCCGTCT TTGCGTTAAT AGAACTCCGC GTCACATATA CGCACAGGTT
ATCTCCGCTG AGGGTGATCG TGTAGTGGCG AGTGCTTCTA CGTTAGACAA AGATCTACGT
AGTGGTTCTA CGGGTAATAG AGACGCTGCT TCTGCAGTTG GTAAATTGAT AGCAGAGCGA
GCAAAGGCTG CTGGTGTTAG TACCGTTGCA TTTGATCGCA GTGGTTTCAA ATACCATGGT
CGAGTAAAAG CGCTTGCAGA TGCTGCACGT GAAGGCGGAT TGGAATTCTA A
|
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| Protein sequence | MNAKKQSRIR RARRARAKMK ELGVSRLCVN RTPRHIYAQV ISAEGDRVVA SASTLDKDLR
SGSTGNRDAA SAVGKLIAER AKAAGVSTVA FDRSGFKYHG RVKALADAAR EGGLEF
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