Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0963 |
Symbol | rplB |
ID | 3967678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1246548 |
End bp | 1247375 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637920030 |
Product | 50S ribosomal protein L2 |
Protein accession | YP_526437 |
Protein GI | 90020610 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.00625904 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000161737 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCTATTG TAAAACGTAA GCCTACTTCA GCTGGTCGTC GCTTTGTAGT TAACGTAGTT AACGCTGATC TACATAAAGG TGCACCGCAT GCTCCTTTGT TAGAAAAGAA AAGTAAAAGC GGTGGGCGAA ACAATAACGG TCGCATCACT ACTCGTCACA TTGGTGGTGG ACACAAGCAG CACTATCGCG TTATCGACTT TCGTCGTAAC AAAGATGGAA TCCCTGCTAA AGTTGAGCGT TTGGAATACG ATCCAAACCG CACTGCCTAC ATCGCGCTAG TATGTTATGC CGATGGTGAG CGTCGCTACA TTATCGCTCC AAAAGGTGTT AAAGCTGGTG ATGTGATTCA GTCTGGTGAT GCTGCTCCAA TCAAGCCTGG TAATGCCCTG CCTTTGCGCA ACATTCCAGT TGGTAGCGTT GTTCACTGTA TTGAAATGAA ACCAGGCAAA GGTGCTCAAA TTGCACGCTC TGCAGGTACA TCGGTTCAGT TAGTTGCTCG TGAAGGTCAA TACTGCACCT TGCGTTTACG CAGCGGTGAG ATGCGCAAAA TTCTTTCAGA ATGTCGCGCA ACTCTAGGTG AAGTGTCTAA CAGTGAACAC AATTTACGTT CACTTGGTAA GGCTGGTGCT TCACGCTGGC GTGGTGTTCG TCCAACCGTT CGCGGTGTAG CGATGAACCC AGTTGATCAC CCGCACGGTG GTGGTGAAGG CCGTACTTCT GGTGGTCGTC ATCCTGTATC ACCTTGGGGT ACGCCTACTA AGGGTTATAA GACTCGTAGT AACAAACGAA CTGACAAGAT GATTGTTCGT CGTCGCAATA AGAAGTAA
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Protein sequence | MPIVKRKPTS AGRRFVVNVV NADLHKGAPH APLLEKKSKS GGRNNNGRIT TRHIGGGHKQ HYRVIDFRRN KDGIPAKVER LEYDPNRTAY IALVCYADGE RRYIIAPKGV KAGDVIQSGD AAPIKPGNAL PLRNIPVGSV VHCIEMKPGK GAQIARSAGT SVQLVAREGQ YCTLRLRSGE MRKILSECRA TLGEVSNSEH NLRSLGKAGA SRWRGVRPTV RGVAMNPVDH PHGGGEGRTS GGRHPVSPWG TPTKGYKTRS NKRTDKMIVR RRNKK
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