Gene Sde_0963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0963 
SymbolrplB 
ID3967678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1246548 
End bp1247375 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content48% 
IMG OID637920030 
Product50S ribosomal protein L2 
Protein accessionYP_526437 
Protein GI90020610 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0090] Ribosomal protein L2 
TIGRFAM ID[TIGR01171] ribosomal protein L2, bacterial/organellar 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.00625904 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000161737 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTATTG TAAAACGTAA GCCTACTTCA GCTGGTCGTC GCTTTGTAGT TAACGTAGTT 
AACGCTGATC TACATAAAGG TGCACCGCAT GCTCCTTTGT TAGAAAAGAA AAGTAAAAGC
GGTGGGCGAA ACAATAACGG TCGCATCACT ACTCGTCACA TTGGTGGTGG ACACAAGCAG
CACTATCGCG TTATCGACTT TCGTCGTAAC AAAGATGGAA TCCCTGCTAA AGTTGAGCGT
TTGGAATACG ATCCAAACCG CACTGCCTAC ATCGCGCTAG TATGTTATGC CGATGGTGAG
CGTCGCTACA TTATCGCTCC AAAAGGTGTT AAAGCTGGTG ATGTGATTCA GTCTGGTGAT
GCTGCTCCAA TCAAGCCTGG TAATGCCCTG CCTTTGCGCA ACATTCCAGT TGGTAGCGTT
GTTCACTGTA TTGAAATGAA ACCAGGCAAA GGTGCTCAAA TTGCACGCTC TGCAGGTACA
TCGGTTCAGT TAGTTGCTCG TGAAGGTCAA TACTGCACCT TGCGTTTACG CAGCGGTGAG
ATGCGCAAAA TTCTTTCAGA ATGTCGCGCA ACTCTAGGTG AAGTGTCTAA CAGTGAACAC
AATTTACGTT CACTTGGTAA GGCTGGTGCT TCACGCTGGC GTGGTGTTCG TCCAACCGTT
CGCGGTGTAG CGATGAACCC AGTTGATCAC CCGCACGGTG GTGGTGAAGG CCGTACTTCT
GGTGGTCGTC ATCCTGTATC ACCTTGGGGT ACGCCTACTA AGGGTTATAA GACTCGTAGT
AACAAACGAA CTGACAAGAT GATTGTTCGT CGTCGCAATA AGAAGTAA
 
Protein sequence
MPIVKRKPTS AGRRFVVNVV NADLHKGAPH APLLEKKSKS GGRNNNGRIT TRHIGGGHKQ 
HYRVIDFRRN KDGIPAKVER LEYDPNRTAY IALVCYADGE RRYIIAPKGV KAGDVIQSGD
AAPIKPGNAL PLRNIPVGSV VHCIEMKPGK GAQIARSAGT SVQLVAREGQ YCTLRLRSGE
MRKILSECRA TLGEVSNSEH NLRSLGKAGA SRWRGVRPTV RGVAMNPVDH PHGGGEGRTS
GGRHPVSPWG TPTKGYKTRS NKRTDKMIVR RRNKK