Gene Sde_0959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0959 
SymbolrpsJ 
ID3967674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1244548 
End bp1244859 
Gene Length312 bp 
Protein Length103 aa 
Translation table11 
GC content45% 
IMG OID637920026 
Product30S ribosomal protein S10 
Protein accessionYP_526433 
Protein GI90020606 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0051] Ribosomal protein S10 
TIGRFAM ID[TIGR01049] ribosomal protein S10, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000233604 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000572443 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCAGAATC AACGTATTCG AATTCGCCTG AAAGCTTTTG ATCACAAGTT GATTGATGCT 
TCTACTCAGG AAATTGTTGA GACCGCTAAG CGTACTGGTG CGCAGGTTCG AGGTCCTATT
CCTCTTCCTA CTCGCAAAGA GCGTTATACG GTTTTGGTTT CGCCGCACGT AAACAAAGAT
GCACGAGATC AATACGAGAT TCGTACTTAC AAGCGCTTGC TAGACATCGT TGAGCCAACC
GAAAAAACGG TTGATGCTTT GATGAAGTTA GATTTGGCAG CGGGTGTTGA AGTACAAATT
AGTTTGGGCT AG
 
Protein sequence
MQNQRIRIRL KAFDHKLIDA STQEIVETAK RTGAQVRGPI PLPTRKERYT VLVSPHVNKD 
ARDQYEIRTY KRLLDIVEPT EKTVDALMKL DLAAGVEVQI SLG