Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0954 |
Symbol | |
ID | 3967669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1238684 |
End bp | 1239451 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637920021 |
Product | GntR family transcriptional regulator |
Protein accession | YP_526428 |
Protein GI | 90020601 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.709612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000169252 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACGTAG CCATTGAACC TAAGAACCTA TCAGGCGGAC GGCTTTACCA GCGCGTCGCA GAGCAACTCG CGGCAGTAAT TGCGGAAGGA GAATACCCTC CTGGCTCGCG CCTACCGGCT GAACGAAAAC TAGCAGAACG CTTTGACGTA AGCCGCCCTA CCGTGCGCGA AGCCATTATC GCACTAGAGC TGGCCGGCTG TGTAGAAGTA CGCGGCGGCT CTGGTGTATA CGTATCTGCC GAAAGCAATA ACAACCTCTC ATCTGCTGAA TTTGCTGTTG GCCCATTCGA TATTCTCGAA GCCCGAATCC TCGTAGAAGG AGAGGCGGCG GAGCTTGCAG CCAAGCGCAT TACCGACGAA GAACTTGTCG AAGTGCGCGC AGCACTCGAA GCTATGGTGC AAGAAAACGA GCAGGAACCC ATCTGCGAAA AAGCCGACCA GAACTTTCAT ATGCTTATTG CCCGTGCCAC CAAAAACGAA GCAGTCGCAT CGGCCTGCGC CCACCTTTGG GCACTGCGCA ACAGCTCACC AGTGTCTGCC CGCATCTTAG AAAAAGTGCG CCAGTCTGGC TCTAGACCAC GCATTGAAGA ACACCTTCTT ATACTAGATG CACTTGAAAG ACGCGACCCA GAGGGCGCCC GTGACGCTAT GCGCGAACAC CTTTCTCGCG TTATCCAGCA ATTATTAGAC GCCACCGAAG CAGAAGCAGT GGAAGAAGCC CGTAGAAAAA TCGCATTTAA TCGCGAACGT TTTGGTATTT CTAAGTAA
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Protein sequence | MNVAIEPKNL SGGRLYQRVA EQLAAVIAEG EYPPGSRLPA ERKLAERFDV SRPTVREAII ALELAGCVEV RGGSGVYVSA ESNNNLSSAE FAVGPFDILE ARILVEGEAA ELAAKRITDE ELVEVRAALE AMVQENEQEP ICEKADQNFH MLIARATKNE AVASACAHLW ALRNSSPVSA RILEKVRQSG SRPRIEEHLL ILDALERRDP EGARDAMREH LSRVIQQLLD ATEAEAVEEA RRKIAFNRER FGISK
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