| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0953 |
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| Symbol | |
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| ID | 3967668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1237117 |
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| End bp | 1238508 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637920020 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_526427 |
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| Protein GI | 90020600 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.161663 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000205432 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTATAAAA TTTCACGCCG CACAACACTC AAAGGCTTAG GCCTAACTTG CCTAGCCGGC
TGCACCACCA GCCTACCCAC ACTAGAGCAA GACCCATGGG CTTTTGCACA AAACATAGCG
GACAACACCA CCATCCCCAC ATTCCCAAAC AAAGAATTTA ATTTACTCGA ATTCGGCGGC
AAAGAAGGGA GCGACAACAC CCTCGCCTTC AAAAAAGCGA TTGCAGCATG CAGCAAAGCA
GGTGGCGGCA AGGTGGTAGT ACCCGCAGGA CGATTTGAGA CAGGCGCCAT CCACTTAGAG
TCGAACGTTA ACCTTCATAT TAGCGAAGGC GCTACCATCG CCTTTTTTAC CGACCCCAAA
TATTACCTGC CTGCGGTTTT CACTCGCTGG GAAGGCATGG AGTGCATGGG CTACTCACCC
CTTATATACG CCTACGGCAA AACCAACATA GCCATTACCG GTAAAGGCAC CCTCGACGGT
CAAGCCGACC CAACGCACTG GTGGGCATGG AAAGGCAACA AAGAATGGGG CGTAGAGGGC
TACCCAAGCC AAAAGGAAAG CCGCAACCAA CTATTTGCCC AAGCAGAAGC TGGCGACCCC
GTTAGAGAGC GCGTGTATGC AGACGGCCAC TACCTGCGCC CCTCGTTTGT GCAACCCTAC
AAGTGCGAAA ACGTGCTGAT AGAAGACATA ACTATTATCA ACGCTCCCTT CTGGTTGCTA
CACCCCACCC TTTCACAAAA CGTCACTGTA CGCGGTGTTC ACCTAGAAAG CCTAGGCCCC
AACTCGGATG GCTGCGATCC TGAAAGCTGT AAGAATGTAG TTATCGAAAA CTGCTTTTTT
AATACCGGTG ACGACTGTAT CGCTATTAAA TCTGGCCGCA ACAACGATGG CCGCAGGCTT
GCCACACCTA CCGAGAACGT GATTATTCGC AACTGTAAAA TGGAAGCGGG TCACGGTGGC
GTAGTTATAG GCTCAGAAAT TTCTGGCGGC GTGCGCAATG TGTTTGCCGA AAATAACGTA
ATGAGCAGCC CCGATTTAGA GAAAGGCATT CGCATTAAAA CCAACTCTGT GCGCGGCGGA
CTGCTAGAGA ACATCTATGT GCGCAACTGC ACCATAGGCG AAGTACAACA AGCCATTGTT
ATTAACTTCC AATACGAAGA AGGCGATGCG GGTAAATTTG ACCCCACCGT GCGCAATGTA
GAAATACGCA ATTTGGTCTG CCAGCACGCC TTACAAGTGT TTAACATCCG CGGTTTTGAG
CGCGCCCCCA TTCAAAACTT TAGGATAATC GACAGCACCT TTGTGCGTGG TGACAACCCA
GGCGTAATTG AACATACCAC AGGGTTAGTT ATCGACAACG TCCAAGTCAA CGGCAAAGCG
TTTAACATCT AG
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| Protein sequence | MYKISRRTTL KGLGLTCLAG CTTSLPTLEQ DPWAFAQNIA DNTTIPTFPN KEFNLLEFGG
KEGSDNTLAF KKAIAACSKA GGGKVVVPAG RFETGAIHLE SNVNLHISEG ATIAFFTDPK
YYLPAVFTRW EGMECMGYSP LIYAYGKTNI AITGKGTLDG QADPTHWWAW KGNKEWGVEG
YPSQKESRNQ LFAQAEAGDP VRERVYADGH YLRPSFVQPY KCENVLIEDI TIINAPFWLL
HPTLSQNVTV RGVHLESLGP NSDGCDPESC KNVVIENCFF NTGDDCIAIK SGRNNDGRRL
ATPTENVIIR NCKMEAGHGG VVIGSEISGG VRNVFAENNV MSSPDLEKGI RIKTNSVRGG
LLENIYVRNC TIGEVQQAIV INFQYEEGDA GKFDPTVRNV EIRNLVCQHA LQVFNIRGFE
RAPIQNFRII DSTFVRGDNP GVIEHTTGLV IDNVQVNGKA FNI
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