| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0951 |
|---|
| Symbol | |
|---|
| ID | 3965346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1231436 |
|---|
| End bp | 1233919 |
|---|
| Gene Length | 2484 bp |
|---|
| Protein Length | 827 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637920018 |
|---|
| Product | DNA-directed RNA polymerase, alpha subunit |
|---|
| Protein accession | YP_526425 |
|---|
| Protein GI | 90020598 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.607652 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000495983 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGAA CGTTTACTCT TGGCCTTTCC GGCATACTTT TAACCTCTCT CATTGGTGCC
GGTTGTAGCA AAAATGACGA AGCAAAACCT TCAGTGCAAT CTGCAACCCC TGTTGTAAAC
AGCACAATCG CAACGGCAGA ACTTGCCAAT CCTTCGCAGT TTCCACGAAT TAACAATGCG
CTTGTATTTA GCTATTACGA TTTAGCAATA GAAGCAAATA CGCCTGTTAG CGCCACATTC
GAAGGTGCAG AGGTAGCCAC CCAGCACGTC GACACCGATG GCGACGGCAG CAAAGATAGC
GTTCAAGTAG CGGTAGAGCT TGCTCCTGCA CAACGCGGCA CACTCGTGCT TTCAAATACT
AAAAGTGAAA AACAATGGCC TGCACTCACT CAAGCAGAAA TATCCCACAA ACAAGGTGGC
GAGTGGGTAC CGCACCCAAA AGTTGAAGGC GCCAAAGCCT ACGAAGGTGG AACCTTTGTA
AACGTAACCG AGCTAACCCC TCCCGACTAT TACACCGATC ACTCTAACTG GATTCGCTAC
GAAGGCCCAG GCATAGAATC CGATAAAGTC GGTTACCGTA TTTATTTAGA TTGGCGTAAT
GGATTTGATA TTTTCGGTAA ATCAGTAAGC ACACCGGTTC TACAAAATGT GGGGCAAGAC
GGATACGAGT CTTACCATCA TTTAGCTGAC TGGGGTATGG ATATACTCAA AGTTGGCAGC
TCATTAGGTG CAGGTGGTTA TGGCTTTTGG AATGGCGAAA GCGTAGAGCT AGTTGCCAAA
GCAGATAGCC GCACGGCGAA AATAATCGAA AATGGACCAC TGCGTTCCGC ACTTAGTATC
GATTACAAAA ATTGGAAAAT TAATAACACG CAAACCGATT TGCACGCGCT ATTTTCTATG
AATGCTGGCA GTCGTTTAGT TAAAACAGAA TTAACCCTTA GTGAAAACTT ACCCAACATT
GCTGTGGGCG TAGTAAAACA TAAAGAAACA GAATTAATTC TAGGCAACAT CGATATACCC
GGCGACGCCT ATTCTTATAT TGCCAGCTGG GGCAAACAAA GCCTTAACGG CGATCACTTG
GGCATGGCGG TATTCTTCCG CAACAAAGAC CTAAACAAAA CCACGCAAGA TAAAAGCTCG
TATATTGCAG TGCTAGAACC CATTCGCGGC GACCTAGATT ACTACTTTGC TGCAGCATGG
GAAGGCGAGC ACGGCGCGGG CATTAAAACT AAAGAAGCTT TTATTGAGTA CCTAGAGCAA
GAAGCAGAAA TGCTTACGCA AAAAACACGC GTAAACCTAG ATACAGCCTA CTCACAAAAA
CACAAGCCAG CAACTAACAC AGCAGATGCC GCTCTGGCAT GGGCAGTACA ATTTGCCGAT
TCTGAACTGG AGCGTAAAAC GCTTGGTTAC GAACACGATG GCTGGGATGT AAACCGTCAG
CGCCCCCCTA AATTTGAATA CGATATTGTA GGTATTCTGC CTATGGCGTA TGCACAGCTA
AGTGAAGTTA CCGGTGAAGA GCGCCATCGA ACTGTGCCCC ACAAGGTAAC GGCAACTTAC
ATAAATGATG ACGGATCGAT AAAGCGCTAC AAGCTTAGCA ACTACAACAT AGATGCCGTG
TCGCCAGGCG TAAGCGTGTT GTATTTATAT GACGACACCA AAGAAGAAAA GTTTAAGCTA
GCAGCAGATT TATTGCGTAG CCAACTCGCC ACCCAACCTC GCACCAGCGA AGGCGCTTTT
TGGCACAAAA AGAAATACGA CTCACAGCTG TGGCTAGATG GCGTTTTTAT GGGAATGCCT
TTTTTAGCCG AGTACACAAC CAAGTTTGAG CACGGCGAAG CGCTAGAAGA AGTGGTTAAA
GAATTTGAAC TCTCGCGCAA ATACCTACGC GACGAGAAAA CAGGCCTCTA TTACCACGGC
TGGGACGAGA AAAAACAACA AGTTTGGGCA AACCCAGAAA CCGGTTTATC ACCAGAATTT
TGGGGTCGCG GCATGGGCTG GTTCGCCATG GCCACTTTAG ATGTATTAGA TTTTATTCCA
GAAGATCAAC CGGAATTACG CCAACCTATT CTGGACATCA TTAAAGAAGT CGCTGTAGAC
CTGCAAAATG TGCAAGACCC AGCAACAGGC ACTTGGTGGC AAGTAATGGA TAAACCCAAT
GCGCCCGGCA ACTACAGGGA AGCCTCTGCC TCGGCAATGT TTACCTATTT TTATGCTAAA
GCAATTCGCA AAGGTTACTT ACCCAAAGAT TACTTAGCCA CCGCGCAAAA AGCCTACGAC
GGTTTGATTA ACGAATTCGT AGTAGTGCAT AAAGACGGAA AAATATCAGT CACCAACCAA
TGCTACGTTG CCGGCTTAGG CTTTGGCCGC GATGGCAGCT ACAACTATTA CATGAGTGAG
CGCGTTGCAG AGAACGACCC TAAAAGCAGC TTCTCTTTTA TATTGGCGGG CTTAGAAATG
CACCGCTTAC TCTCTAACAA GTAA
|
|---|
| Protein sequence | MKRTFTLGLS GILLTSLIGA GCSKNDEAKP SVQSATPVVN STIATAELAN PSQFPRINNA
LVFSYYDLAI EANTPVSATF EGAEVATQHV DTDGDGSKDS VQVAVELAPA QRGTLVLSNT
KSEKQWPALT QAEISHKQGG EWVPHPKVEG AKAYEGGTFV NVTELTPPDY YTDHSNWIRY
EGPGIESDKV GYRIYLDWRN GFDIFGKSVS TPVLQNVGQD GYESYHHLAD WGMDILKVGS
SLGAGGYGFW NGESVELVAK ADSRTAKIIE NGPLRSALSI DYKNWKINNT QTDLHALFSM
NAGSRLVKTE LTLSENLPNI AVGVVKHKET ELILGNIDIP GDAYSYIASW GKQSLNGDHL
GMAVFFRNKD LNKTTQDKSS YIAVLEPIRG DLDYYFAAAW EGEHGAGIKT KEAFIEYLEQ
EAEMLTQKTR VNLDTAYSQK HKPATNTADA ALAWAVQFAD SELERKTLGY EHDGWDVNRQ
RPPKFEYDIV GILPMAYAQL SEVTGEERHR TVPHKVTATY INDDGSIKRY KLSNYNIDAV
SPGVSVLYLY DDTKEEKFKL AADLLRSQLA TQPRTSEGAF WHKKKYDSQL WLDGVFMGMP
FLAEYTTKFE HGEALEEVVK EFELSRKYLR DEKTGLYYHG WDEKKQQVWA NPETGLSPEF
WGRGMGWFAM ATLDVLDFIP EDQPELRQPI LDIIKEVAVD LQNVQDPATG TWWQVMDKPN
APGNYREASA SAMFTYFYAK AIRKGYLPKD YLATAQKAYD GLINEFVVVH KDGKISVTNQ
CYVAGLGFGR DGSYNYYMSE RVAENDPKSS FSFILAGLEM HRLLSNK
|
|---|
| |