| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0944 |
|---|
| Symbol | |
|---|
| ID | 3965339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1224214 |
|---|
| End bp | 1225383 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920011 |
|---|
| Product | ribosomal protein L30 |
|---|
| Protein accession | YP_526418 |
|---|
| Protein GI | 90020591 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4677] Pectin methylesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000748406 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGTACAA AAATTAATTT TTTGCTATTA GGTTTTATTT TGTCTGCATG TTCATTAAGT
GGCTGCGCCG ACAAAATAAA GCGCAATACG CCTTTAACCG AAACGGCATT GCCGAGTAAA
AAAATACTCT ATGTACAAAC CGAAGTATGT GACCCGCCTT CGCAATTAAC GGGTAGTTGC
TACAACAGCT TGCAGCGAGC TATTGACGTG GCGCACACAG TGCCGTCTGC TACCCATGTA
ACCATTGAAA TGGCTGCGGG GCATTACCAC GAACGCATTG TGCTTAGCCG TGGCAATATC
GATATTGTTG GTGCAGGTAA AAATAAAACC TATGTTCAAT ACAACCTGAA TGCCGAGCAG
GGTAAAGCTT ATCACCGCGA CGGTTGGGGT ACTCCTGGCT CAGCTACATT TACCATTAAT
GCCAGTGAAG TAAATGTTAG CGATTTAACT ATCGAAAATA CTTTCGACTT TTTAAGAAAT
GATTCAAAAG ATAAAACCGA CCCTTCAAAA GTGAGGGCAT CGCAAGGCGT TGCATTATTA
TTGGATGAAC ACAGCGATAA GGTTGCGCTG TATCGAGTAG GCCTATACGG ATACCAAGAC
ACCCTATTTG CAAATGGAAA GCGTGCATTT ATCTACCAAT CAGATATTGC AGGCAATGTT
GATTTTATTT TTGGCGCTGG CCAAGTGGTT ATAGAAAATA GTCGTGTTAT TTCTAGGCCG
CGCGGCAAAG CCATTGCTTC CAATGAAATT GCCGGCTATA TCACAGCGCC ATCCACCAAT
ATTACGGACG CCTTTGGTCT GGTTTTTATT AATAGTCGAT TAGAACGTGA GCAAGGCGTG
GCAGATGCGT CGGTCACCTT GGGTCGCCCT TGGCACCCTA CAACCAATTT CAGCGATGGC
CGATATGCCG ACCCAAACGC GATTGGCCAT GCGCTATTTT TTAACTGCTT TATGGATGCG
CATATTCACC CCGCGAGATG GTCTAGCATG AAAGGCACCG CTAAAGACGG CAGTAAAACG
CTAGTGTTTA CGCCCGAGCA ATCGCGTTTT TTTGAAGTTC AGTCCTTTGG CCCCAGCGGC
AACGATGAAG TAACCACCTC GTATCATTCG TTAAGCGCCG ACTCATTACG CGAACAAGCG
CTCGGCGATT GGAATGTATC AATTAACTAA
|
|---|
| Protein sequence | MGTKINFLLL GFILSACSLS GCADKIKRNT PLTETALPSK KILYVQTEVC DPPSQLTGSC
YNSLQRAIDV AHTVPSATHV TIEMAAGHYH ERIVLSRGNI DIVGAGKNKT YVQYNLNAEQ
GKAYHRDGWG TPGSATFTIN ASEVNVSDLT IENTFDFLRN DSKDKTDPSK VRASQGVALL
LDEHSDKVAL YRVGLYGYQD TLFANGKRAF IYQSDIAGNV DFIFGAGQVV IENSRVISRP
RGKAIASNEI AGYITAPSTN ITDAFGLVFI NSRLEREQGV ADASVTLGRP WHPTTNFSDG
RYADPNAIGH ALFFNCFMDA HIHPARWSSM KGTAKDGSKT LVFTPEQSRF FEVQSFGPSG
NDEVTTSYHS LSADSLREQA LGDWNVSIN
|
|---|
| |