| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0942 |
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| Symbol | |
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| ID | 3965337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1217531 |
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| End bp | 1219840 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920009 |
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| Product | ribosomal protein L18 |
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| Protein accession | YP_526416 |
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| Protein GI | 90020589 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000113865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00163221 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAACA CTAAACACCT ACTCAATAGC GGTGCCGTAT TGCTAGCTAG CAGTATTGCA
ACAGCTGCGA TGGCGGGGCC TGTGGGCTTT GCATCGCTTA ATGGTGGCAC AACGGGCGGT
CAAGGCGGTC AAGTTGTATA CGCCAACACC GGTACACAAA TTAACGAAGC CATGTGTAAC
CGCCCATCTC ACGATACGCC GTTAATTATT TATGTATCCG GTACCATTAA CCACGGCAAC
ACCGAAAAGG TGTCGGGTAA TTGCGATACA ACCGGCGACG AGATTCAGTT TAAAAAAGTT
AAAAACCTAT CGTTAATTGG TACTGGTAAC GGTGCGGTGT TTGATCAAAT AGGTATTCAT
TTACGCGAAA CCTCCAATAT TATTCTGCAA AACCTTCATA TTAAAAATGT TAAAAAATCG
GGTTCTCCAA CCTCCAATGG CGGCGATGCA ATTGGAATGG AGTCTGGCGT ATACAATGTG
TGGGTGGATC ACTGTGAGCT AGAAGCATCC GGTGGTGAAA AAGATGGTTA CGATTCATTG
CTAGATATGA AAGCAACCAC GCAGTATGTA ACCGTTTCTT ACACCTATTA CCACGATTCA
GGCCGCGGTG GTTTAATGGG GTCGAGCGAT AGTGACGATA CCAACACCTA CGTGACTTTC
CACCACAATT ACTACAAAAA TATGGATTCA CGCTTACCGC TTTTACGCCA CGGTACTGCG
CATGCCTTTA ACAACTATTA CGATGGCATT ACCAAATCTG GTATGAACCC CCGTATAGGC
GGTCAAATAA AAGCAGAAAA TAACTATTTC GAAAACGCAC ACAACCCAAT AGGTACGTTT
TACACAAACG ATATGGGTTA CTGGGACTTA AGCGGCAATA TATTTGGCAA CAACGTAACG
TGGGCGTCTG CGGATGATGA AACCCCTGCA GGGCCGAATC CACAATCCAC AACGTCCATT
CATATTTCTT ACCCCTACAG CTTGGATGAC GCAACGTGCG TGCCGAAGAT TGTAAAAGCT
ACTGCGGGTG TGGGTAACGG TTTGGCTGTG TCTACCGGTG GTAGCAATTG CGGTACTTCT
AGCTCTTCGT CTAGCAGCTC TTCGTCCAGC TCTACCTCGT CTACCAGTTC TACATCTAGC
AGTTCTTCAT CATCCAATAG TTCTTCTGGT GGCTCAGGTG TAAACCTTTC AATTGGCGCA
GGTTCTGATG GTAGCAGTAA AGGTGCGGGC TCTTATGGCG ATGTGCGCGA TGGCAATATG
AGCACCTACT GGGCACCGAG TGGCAGCACT GGTCGCGTAT CTATTAAGTG GAGTTCGGCA
ACGACGGTAA GTAGCATTGT TATTAAAGAA GCGGCTGGCT TTGAAGGTAA CATTACTGGC
TGGCAAGTTG TAAACAACGA GAATGGCGCA GTATTAAAAA GCGGCTCTAA CGCTGGCGTA
ATTTCTTTTT CTCCGGTTTC TACTACGAAG TTAAATTTCG AAATTACCTC TTCGAACGGC
ATGCCCACGG TTGCAGAATT TGAAACCTAT AGCGGCACGG TTGGTGGTAC TTCGTCATCC
AGTTCTTCAA GTAGTTCGTC AAGCAGTTCT TCAAGCAGCT CAAGTTCAAC GAGCAGCTCT
GGTGGTTCCG CGAATCTAGG TACCTCGGTA AGTGGCGATC AGGTTTCACT TAATTGGTCT
ACCTCAAACA TTGATGTGGG TTCGCAGCAA GTTTATCGCG ATACCGATTC AAACCCATCT
GGTCGTGTGC GTATCTCTGC AGGCGTTTCT GGTAATTCGT ATACCGATTA CGGCTTAGCT
AGCGGTACTT ATTACTACTG GATAAAAATT ACCGATCAAA ACGGTGTTGT TTACAACACA
AATGCCGCAG AAGCGGTTGT AGGCAGCCAA GCGCCAACGA CGTTTACTGC GCAAGAGTCT
GCGGGTTTCT GCTCTGTTAA CGGTTCTGTT GATTCCAATA ACGCTGGCTA CACTGGCGAT
GGTTTTGTAA ATACCGATAA CGCCAGTGGC AATGCAGCAG TTTATGCCTT CAATGCACCT
AGTGCGGGTA TGTATAGCTT GCAGGTTCGC TACGCAAACG GTTCTAGTGC ACGCCCAGGT
GATGTGCTGG TCAACGCTGG CAATATTGGA ACATTTGATT TTTCCAGTAC CGGTTCTTGG
ACATCTTGGG CAAACAGTAA TGAGTTAAGT GCGTACTTCT CTGCGGGTAA CAATACTGTT
CGTATTCAAG CTACTAACTC TGGCGGCTTA CCTAACTTAG ATAGTGTTTC TGTAACGGGT
AATGCACCAG CGGCAGGCAA CTGTAATTAA
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| Protein sequence | MRNTKHLLNS GAVLLASSIA TAAMAGPVGF ASLNGGTTGG QGGQVVYANT GTQINEAMCN
RPSHDTPLII YVSGTINHGN TEKVSGNCDT TGDEIQFKKV KNLSLIGTGN GAVFDQIGIH
LRETSNIILQ NLHIKNVKKS GSPTSNGGDA IGMESGVYNV WVDHCELEAS GGEKDGYDSL
LDMKATTQYV TVSYTYYHDS GRGGLMGSSD SDDTNTYVTF HHNYYKNMDS RLPLLRHGTA
HAFNNYYDGI TKSGMNPRIG GQIKAENNYF ENAHNPIGTF YTNDMGYWDL SGNIFGNNVT
WASADDETPA GPNPQSTTSI HISYPYSLDD ATCVPKIVKA TAGVGNGLAV STGGSNCGTS
SSSSSSSSSS STSSTSSTSS SSSSSNSSSG GSGVNLSIGA GSDGSSKGAG SYGDVRDGNM
STYWAPSGST GRVSIKWSSA TTVSSIVIKE AAGFEGNITG WQVVNNENGA VLKSGSNAGV
ISFSPVSTTK LNFEITSSNG MPTVAEFETY SGTVGGTSSS SSSSSSSSSS SSSSSSTSSS
GGSANLGTSV SGDQVSLNWS TSNIDVGSQQ VYRDTDSNPS GRVRISAGVS GNSYTDYGLA
SGTYYYWIKI TDQNGVVYNT NAAEAVVGSQ APTTFTAQES AGFCSVNGSV DSNNAGYTGD
GFVNTDNASG NAAVYAFNAP SAGMYSLQVR YANGSSARPG DVLVNAGNIG TFDFSSTGSW
TSWANSNELS AYFSAGNNTV RIQATNSGGL PNLDSVSVTG NAPAAGNCN
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