| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0941 |
|---|
| Symbol | |
|---|
| ID | 3965336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1215435 |
|---|
| End bp | 1216913 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637920008 |
|---|
| Product | putative D-mannonate oxidoreductase protein |
|---|
| Protein accession | YP_526415 |
|---|
| Protein GI | 90020588 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0246] Mannitol-1-phosphate/altronate dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0000798922 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00848931 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA TCAATAATGA CTTGCTGGCA AGTGTAGATA GCTCTGCAAT TCAATTGCCG
CAATACGATC GCGCAGGGGT AAAGCCTGGC ATTGTTCATT TGGGTATCGG GGCTTTCCAC
AGAGCTCATC AGGCGTTTTA CACCGAAGCT GTGTTAAACC AGTTTGGTGG CGACTGGGGC
ATTATTGGCT GCAGTCTTCG CTCTGCATCG GTAAAAACCC AGCTGGCAGA GCAGGATGGC
TTGTACACCC TGGTAGAGCG TGGCCCAGAA GGTGAAAAGT TTCAAATAAT GGGTGCAGTA
CAGCAGGTGG TTGTAGGGCC AGAAGACCCA GCAGCGTTAG TGGCTATTAT GGCTAACCCG
CAAACTCAAA TTGTGTCGTT AACCGTTACT GAAAAAGGCT ATTGTCACGA CCCTGCTACC
GGTAATTTAA ACCTTAGCCA CCCCGATATT CAGCACGACC TAGGCAACCT TAATGCGCCT
AAATCGGCCA TCGGCTACAT TGTTGCTGCA TTGCTTGCAC GTAAAGAATC GGGCCAGTCC
AGCTTTACCG TATTAAGTTG CGACAATTTA CCAAACAATG GTGAGGTGTT AGAAAAAGTT
GTTTTACAGT TCGCCAAGCA GGTTAGTGCG GAGCTTTGCG AGTGGGTGAG TGCTCACACT
AAGTTCCCTT CTACTATGAT CGACCGCATA GTGCCGGCCA CTACAGATAG TGATCGCGCA
GACCTCGAGG CGAAAGTGGG CTACCGCGAT GAAGGCATGG TGGTGGCAGA GCCGTTTACC
CAGTGGGTAA TTGAAGATAA ATTCTGCTCG GCGCGCCCGC AGTGGGAGCA AGTGGGTGCA
TTGCTGGTAG AAGATGTTAC AGCGTTCGAA AAAATGAAGT TGCGTTTGCT AAACGGCAGC
CACTCTATGT TGGCTTATGC CGGCTATTTG GCGGGCTTTG AAACCATTAG CGATGTAATG
ACAGAGCCTG CTTTTGTCGC GCTATGTAAA AAGTTTATGG ATACCGAAGC TGGTCCTACA
GTAAAAACGC CAGACGGTTT TGATATTGAA GATTACAAAA AGCAACTGCG CGACCGCTTT
GCCAACCCTG GTTTGAAGCA TCGCACTTGG CAGATTGCGA TGGATGGCTC GCAGAAGATT
CCTCAGCGCC TATTGGAAAC CTTGCGTGAG CAGTTGGCCA GTGGCGGTAG CATAGAGGTG
ATAAGCCTAG CGATTGCCGC GTGGTTTAAA TACGTTTCGG CTGTAGATGA TGCCGGCAAT
GCCATAGATG TGCAGGACCC GCTGGCAGCG CGTTTAAAAT CGCTGTGTGA CAGTCACCCC
AATACCTCCG AGCGAGTAGC AGCATTGCTG GGCGTAAAAG AAGTGTTTGG TGAAGACTTG
GTAGGCTGCT CGGCTTTTGC TGCCGCTATT AGCGCATGGT TAGATGCATT TGCTAAACAG
GGTGTGCTGG CAACCATCAA GCAATCCTTC TCTGCATAG
|
|---|
| Protein sequence | MKRINNDLLA SVDSSAIQLP QYDRAGVKPG IVHLGIGAFH RAHQAFYTEA VLNQFGGDWG
IIGCSLRSAS VKTQLAEQDG LYTLVERGPE GEKFQIMGAV QQVVVGPEDP AALVAIMANP
QTQIVSLTVT EKGYCHDPAT GNLNLSHPDI QHDLGNLNAP KSAIGYIVAA LLARKESGQS
SFTVLSCDNL PNNGEVLEKV VLQFAKQVSA ELCEWVSAHT KFPSTMIDRI VPATTDSDRA
DLEAKVGYRD EGMVVAEPFT QWVIEDKFCS ARPQWEQVGA LLVEDVTAFE KMKLRLLNGS
HSMLAYAGYL AGFETISDVM TEPAFVALCK KFMDTEAGPT VKTPDGFDIE DYKKQLRDRF
ANPGLKHRTW QIAMDGSQKI PQRLLETLRE QLASGGSIEV ISLAIAAWFK YVSAVDDAGN
AIDVQDPLAA RLKSLCDSHP NTSERVAALL GVKEVFGEDL VGCSAFAAAI SAWLDAFAKQ
GVLATIKQSF SA
|
|---|
| |