Gene Sde_0940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0940 
Symbol 
ID3965335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1213937 
End bp1215352 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content51% 
IMG OID637920007 
Productglucuronate isomerase 
Protein accessionYP_526414 
Protein GI90020587 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1904] Glucuronate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000809082 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00761508 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGAAC TGATTTTGCA CCCCGACCGC CTCTTTCCTG CCGAGGAATC TGTACGTGGC 
ATTGCCCGCA GGTTGTACGC AGAGGTTAAA GATCTTCCTA TTGTTAGCCC GCACGGTCAT
ACCGACCCAA GTTGGTTTGC AGATAACCAG CCCTTCGATA GCGCAGCGGA TTTGCTAATT
AAGCCAGATC ACTATGTATT CCGCATGCTG TATAGCTTGG GTGTTCCTTT GGAATCCTTA
GGTGTGCCCA CCGTTGATGG CACTGAAGTT GAAACCGATG GCCGCAAAAT TTGGCAAACC
TTTGCCAAGC ATTACACCGC CTTCCGCGGC ACGCCTTCGC GCATGTGGCT AGATCACGTA
TTTAAAGATG TGTTCGGTTT TGAAAAAGCG TTAAGCGCAG CAACGGCAGA TGATTATTAC
GACGGCATTA ACGCTGCGCT GCAAACACCA GAGTTCTTGC CGCGCGCGTT GTTTGATCGG
TTTAAAATTG AATGGTTGGC CACCACCGAG TCGCCACTTA ACGACTTGCG CCACCACCAA
AAAATCCGTG AAAGCGGCTG GAAGGGCAAC GTTATTACCG CTTACCGCCC AGACCCAGTG
GTAGACCCCG ACTTCGAAGG CTTTGCTTCT AACGTGGCTT ACTTAGGTAA GATTACTGGC
GAAGACACGT CCAACTGGGA AGGCTACCTA GCGGCTTTGC GCAACCGTCG CGAGTACTTT
AAGGCGCACG GTGCAACATC CACCGACCAC GGCCACCCAA CAGCTGTAAC CGCAGATTTG
TCGCGCCCAG AAATAGAAAC CTTATTCGCG AAAGCGTTAG CAGGTAAATG CAGCGCAGCG
GAAGCTGAAT TGTTCCGCGG TCAAATACTT ACCGAAATGG CTGGCATGAG TTTAGAAGAC
GGCTTGGTGA TGCAGATTCA CCCCGGCTCA TTCCGCAACC ATAACCCTAA ATTGTTCGCG
CGCTACGGCC GTGATAAAGG GGCAGATATC CCATCTCAAA CTGAGTATGT GAACGCGCTT
AAGCCGTTGC TAGACAAATA CGGCAACGAG CCTAACCTTA CTATTATTCT GTTCACTCTG
GATGAGACGG TATACAGCCG CGAGTTGGCG CCTCTTGCGG GTCATTACCC TGCATTAAAG
TTGGGGCCAT CTTGGTGGTT CCACGATAGC CCAGAAGGTA TGCGCCGCTT CCGTGAACAG
GTAACCGAAA CAGCGGGTTT CTATAACACT GTAGGCTTTA ACGACGATAC ACGCGCATTC
CTGTCTATTC CAGCACGCCA TGATGTGGCG CGTCGAATGG ATTGCGGCTT CTTGGCCAAG
CTTGTTAGCG AGCACCGTTT GCAGGAAGAC GAAGCACGCG AAGTGGCTAT CGACTTAACT
TATAACTTGG TTAAGCAGGC CTATAAATTA GATTAA
 
Protein sequence
MSELILHPDR LFPAEESVRG IARRLYAEVK DLPIVSPHGH TDPSWFADNQ PFDSAADLLI 
KPDHYVFRML YSLGVPLESL GVPTVDGTEV ETDGRKIWQT FAKHYTAFRG TPSRMWLDHV
FKDVFGFEKA LSAATADDYY DGINAALQTP EFLPRALFDR FKIEWLATTE SPLNDLRHHQ
KIRESGWKGN VITAYRPDPV VDPDFEGFAS NVAYLGKITG EDTSNWEGYL AALRNRREYF
KAHGATSTDH GHPTAVTADL SRPEIETLFA KALAGKCSAA EAELFRGQIL TEMAGMSLED
GLVMQIHPGS FRNHNPKLFA RYGRDKGADI PSQTEYVNAL KPLLDKYGNE PNLTIILFTL
DETVYSRELA PLAGHYPALK LGPSWWFHDS PEGMRRFREQ VTETAGFYNT VGFNDDTRAF
LSIPARHDVA RRMDCGFLAK LVSEHRLQED EAREVAIDLT YNLVKQAYKL D