| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0934 |
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| Symbol | |
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| ID | 3965329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1206681 |
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| End bp | 1207988 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920001 |
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| Product | ribosomal protein L16 |
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| Protein accession | YP_526408 |
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| Protein GI | 90020581 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.113697 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00733606 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAATTAT CCGTCCTAAT ATTAGTTTTA ACATTTGTTG TATTGCTGTT TCTAAACGTT
CCCATTGCAA TAAGCATTGG AGTCGCGAGT TTTGCAGCAA TGCTTGCTAC CATCGATTTT
ATTCCTGCAG CTATGACGAT GGCCCAGCGC ATGGGGGGCG GCATAAATAG CTTCTCTTTG
TTGGCCATAC CGTTTTTTAT TCTTTCCGGC CTGCTTATGG GGCGCGGCGG TATTGCGCAT
CGTTTAATTG AGTTCGCCAA AGTGGTTATT GGTATGTTGC CTGGCGGCTT AGCGTTTGTG
AATATTATTA GCTGTACGCT GTTTGGTGCT ATTTCGGGTT CTGCTGTTGC AGCAACGTCA
GCGATAGGTG GGTTTATGAT TCCCACCATG AATAAGGAAG GCTACGACAA AAACTTTAAT
GCTGCGGTTA CTGTGGCGTC GTCAACAACT GGCCTACTTA TTCCGCCAAG TAATATTTTA
ATTGTTTATT CTCTTGCTAG TGGCGGTGTT TCTATTGCTG CATTATTCGT GGCGGGTTAT
TTGCCAGGTT TATTGGTGGC GTTATCTTTA ATGGTTGTGT GTGCCATATA CGCAAAAATT
CACAATTACC CTGTTGGAAA AATTCCAACC GCGCGTGAAT TCGCAAGAAA GTCTATTGAT
GCTGTACCAA GCTTGATGCT TATTGTGTTG GTTATTGGCG GTATTATTGG TGGCTTTTTC
ACTGCTACCG AGGCCAGTGT GGTCGCTGTG CTGTATGCGC TTTCGTTGTC GGTATTTGTG
TATAAAGAAG TGCGAGTGTC TGATCTGCCC GACATTTTAG TGAAGTCGGT GGAGACAACG
GCAATCGTTA TGCTGCTAAT TGGTACTTCT ACGGCAATGT CGTGGATGTT GAGCTATGAG
AACATACCGC AAAGCATCAG TGCTGCGTTA ATGGGGTTAA GCGATAACCC GTTTATTATT
CTACTTACCA TTAACCTTAT TCTGTTGTGT GTAGGTGTGT TTATGGATAT GACGCCTGCG
GTACTTATAT TTACCCCTAT CTTTTTGCCG GTTGCTGTAG AGTTGGGCAT GTCGCCTCTG
CACTTCGGTA TTATGATGGT GTTAAACCTC TGTATCGGGC TGTGTACACC ACCGGTGGGA
GCGGTGCTGT TTGTGGGTTG CGGTATTGCC AAAACCACTA TAGGTCAGCT TATTAAACCG
CTTATGCCTA TGTACGCGGC CATGGTGGTG GCCCTGTTAC TGGTAGCGTA TGTGCCCGCA
ATTAGTGAGT TTTTACCCAT ATTCTTCGAT CTATACGATA AGCCCTAA
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| Protein sequence | MELSVLILVL TFVVLLFLNV PIAISIGVAS FAAMLATIDF IPAAMTMAQR MGGGINSFSL
LAIPFFILSG LLMGRGGIAH RLIEFAKVVI GMLPGGLAFV NIISCTLFGA ISGSAVAATS
AIGGFMIPTM NKEGYDKNFN AAVTVASSTT GLLIPPSNIL IVYSLASGGV SIAALFVAGY
LPGLLVALSL MVVCAIYAKI HNYPVGKIPT AREFARKSID AVPSLMLIVL VIGGIIGGFF
TATEASVVAV LYALSLSVFV YKEVRVSDLP DILVKSVETT AIVMLLIGTS TAMSWMLSYE
NIPQSISAAL MGLSDNPFII LLTINLILLC VGVFMDMTPA VLIFTPIFLP VAVELGMSPL
HFGIMMVLNL CIGLCTPPVG AVLFVGCGIA KTTIGQLIKP LMPMYAAMVV ALLLVAYVPA
ISEFLPIFFD LYDKP
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