| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0925 |
|---|
| Symbol | |
|---|
| ID | 3965566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1191859 |
|---|
| End bp | 1196091 |
|---|
| Gene Length | 4233 bp |
|---|
| Protein Length | 1410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637919992 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_526399 |
|---|
| Protein GI | 90020572 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.15771 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00023271 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAAAGACT TACTCAATCT TTTGAAAAAC CAAGGCCCAT CTGATGAATT TGATGGTATC
CGTATCGGTT TAGCATCACC CGATATGATT CGCTCTTGGT CTTATGGCGA AGTTAAAAAG
CCAGAAACCA TTAACTACAG AACCTTCAAG CCTGAGCGTG AAGGTCTGTT CTGTGCCAAA
GTATTTGGTC CAGTAAAAGA TTACGAATGC TTGTGTGGTA AATACAAGCG TATGAAGCAC
CGCGGAATTA TCTGTGAGAA GTGCGGCGTA GAAGTTACAT TGGCTAAAGT TCGTCGTGAC
CGCATGGCTC ACATCGAATT GGCTAGTCCT GTTGCCCATA TTTGGTTCTT GAAGTCGCTA
CCTAGCCGTA TCGGTTTGTT GCTAGATATG ACTTTGCGCA GCATTGAGCG CGTATTGTAT
TTCGAAAGCT ACGTGGTTAC TGATCCAGGT ATGACTACCC TAGAGAAAGG GCAGTTGTTA
ACCGATGAGC AGTACTTCGA GGCAATGGAA GAGTTCGGTG ACGAGTTCGA AGCAAAAATG
GGTGCCGAAG CTATTCAGCA GTTGATGAAA GACATCGAGC TGGAGCGTGA AGCACAAGAA
ATTCGCGAGC AAATTCCTAA CACTAACTCT GAAACAAAAA TCAAAAAGCT ATCTAAGCGT
TTGAAATTGT TAGAGGCCTT TATTCAATCT GGTAACAAGC CAGAGTGGAT GGTGTTGGAA
GCGCTACCGG TTCTACCACC TGATTTGCGT CCGTTGGTTC CGCTAGACGG TGGCCGTTTT
GCAACGTCCG ATCTTAACGA TTTGTACCGT CGCGTAATTA ACCGTAACAA CCGCTTGAAG
CGCTTGTTGG ATTTGAATGC TCCAGACATC ATCGTGCGCA ACGAAAAGCG TATGCTTCAA
GAGTCTGTGG ATGCGTTGCT TGATAACGGT CGTCGCGGTC GTGCCATTAC CGGTTCTAAC
AAGCGCCCAT TAAAATCTTT GGCAGATATG ATCAAAGGTA AGCAGGGCCG TTTCCGTCAG
AACTTGCTTG GTAAGCGTGT AGATTACTCC GGTCGTTCTG TAATTGTGAC CGGTCCTACC
TTGCGTTTGC ATCAGTGTGG TCTTCCTAAG AAGATGGCGC TTGAGCTGTT TAAGCCTTTC
ATTTTTAGTA AGTTGGAGTT GCGTGGGCTA GCGACAACCA TTAAAGCTGC TAAGAAAATG
GTAGAGCGCG AAGAGCCTGT TGTATGGGAT ATTCTCGACG AAGTTATTCG TGAGCACCCT
GTATTACTTA ACCGTGCACC AACACTTCAC CGTTTGGGCA TTCAGGCGTT TGAGCCAGTG
TTAATTGAAG GTAAAGCTAT TCAATTGCAC CCACTCGTTT GTGCTGCGTA CAACGCTGAC
TTCGATGGCG ACCAAATGGC TGTGCACGTT CCGTTAACGC TAGAAGCTCA GTTAGAAGCT
CGAGCGTTAA TGATGTCTAC CAACAACATT TTATCGCCAG CATCGGGCGA GCCAATTATT
GTTCCATCTC AGGACGTTGT ATTGGGCTTG TACTGGATGA CTCGCGAGCG CGTAAATGAT
AAAGGCGAAG GCATGATCTT CTCCGATATC AAAGAAGTAT CTCGTGCTTT CTATTCTAAG
CAAGTTGGCT TGCAAGCGCG TATCAAAGTG CGTATTGATG AAACCATTAT GGAAGAAAGT
GGCGAGAGCG AATCTAGCTA CCGTATGGTT GATACCACTG TTGGACGTAT GTTGCTTTGG
GAAATCGTTC CAAAAGGTAT TCCTTTTGAA ATGATCAACA AGCCAATGGT TAAAAAGGCG
ATTTCTGCGG TAATTAACTT CTGTTACCGA ATTGTTGGCT TAAAAGCCAC CGTGATTTTT
GCTGACCAAT TAATGTATAT GGGTTATGAC TTCAGTACTA AGTCTGGCTC TTCTATTGGT
GTAAACGACT TTGAAATTCC TGAAGCTAAA GCGGGCATGA TTGAGCGCGC CGATGCAGAG
GTAAAAGAAA TCGAGGCGCA GTACGCTTCC GGTTTGGTTG CTCAGGGTGA GAAATACAAC
AAAGTTATCG ATATTTGGTC GCGCGCAAAC GACCTTGTAG CTAAATCGAT GATGGAAGGT
ATTTCTAAAG AAACAGTTAA AAACAAACAA GGCGAAGACG AAGAGCAAGC ATCATTTAAC
TCCGTGTTTA TGTATGCCGA CTCAGGTGCA CGTGGTAGCC CCGCGCAGAT TCGTCAGCTA
GCTGGTATGC GTGGTTTGAT GGCGCGTCCA GACGGCTCCA TTATTGAAAC GCCTATTACT
GCAAACTTCC GTGAAGGTTT GAACGTACTT CAGTACTTCA TCTCTACTCA CGGTGCTCGT
AAAGGTTTGG CGGATACCGC ACTTAAAACA GCAAACTCGG GTTACTTGAC TCGTCGTTTG
GTGGATGTTG CGCAAGACGT TGTAATTACA GAGCAAGATT GCGGCACCGA CGAAGGTTTG
AGCATGACCC CTGTTATTGA GGGTGGTGAT GTTATCGAAT CTCTAGGCGA CCGTATCTTG
GGTCGTGTTG TTGCACGTGA CGTGATTCGC CCGAATAGCG ACGAAATTTT GGTTCCTGCT
GGCACCATGA TCGACGAGAA GTGGGTTGAG CGCATTGAGA GCATGGGTAT CGATGAGGTA
ACTGTACGCT CTGCAATTAG CTGTGACGCT GTATTTGGTA TTTGTGCCCA ATGTTACGGT
CGCGACTTGG CCCGTGGTCA TCGCGCAAAC GTTGGTGAAG CTATTGGTGT TATCGCTGCT
CAGTCTATTG GTGAGCCAGG TACACAGCTT ACAATGCGTA CGTTCCACAT TGGTGGTGCG
GCAAGCCGAG CGTCCGCTGC AGATAGTGTA GAAGTTAAAC AAGAAGGTAC CGTTCGTTTG
CACAACATTA AAGTTGTTGC GCGTGAATCC GGTGAGCTTA TCGCTGTTTC TCGTTCTGGT
GAATTGGCGC TTGCCGATGC TGCAGGTCGT GAGCGCGAGC GTTATAAGAT TCCTTACGGT
GCTGTTATTA CCGTTAAAGA AGGTGAGCAA GTTAAAGGCG GTAGCATAAT CGCTAAGTGG
GATCCGCACA CTCACCCAAT CGTAACTGAG GTTGCTGGTC GTGTTGTGTT GGCTGGGATG
GAAGACGGTC TTTCTATTCG CAAGCAAACA GACGAATTAA CTGGTTTGAC CACCATTGAA
ATTCTTGATC CAAGTGAGCG TCCTTCAGCC GGTAAAGACT TGAAGCCAGC TGTAACGCTA
GTGGATGAGA ATGGTAACGA ATTGAAACTT GCCAACTCTG AGCAGCCAGC ACATTACATG
CTGCCAGGTA AGTCTATCTT CAGTTTGAAG AACGGAGATA CTGTTGGTGT TGGTGACATT
ATTGCGCGTA TTCCTCAAGA GGGATCCAAA ACACGCGATA TTACGGGTGG TCTACCACGC
GTTGCCGACC TTTTCGAAGC GCGTAAACCA AAAGAGCCGT CAATTCTTGC GGAAATTTCT
GGTACCGTTT CGTTCGGTAA AGAAACAAAA GGTAAGCGTC GTTTAGTTAT TACCCCTCCA
AATGGTGCGG TATTAGAAGA CGGCTCCACT CATTACGAAG TGCTTATTCC TAAGCATCGT
CACCTAACTG TGTTCGAAGG TGAAACAGTT GCTAAGGGTG AAGTGGTTTC GGATGGCCCA
AGCAATCCGC ACGATATCTT GCGCTTGAAG GGTGTAGAAG CTTTGGCTAA CTACATCACC
AACGAGATTC AAGATGTTTA CCGCTTGCAG GGTGTAAAAA TTAACGATAA GCACGTTGAA
GTAATCGTTC GTCAAATGTT GCGTAAAGTT GAAATTACCG GCATGGGTGA TTCTAGCTTC
GTTAAAGGCG AGCAAGTTGA GTATATTGCC GTTCTGCAGG AAAACGAGAA GTTGCGTGCC
GAAGGCCGTC AACCTGCTCG TTTCGAGCGA CAATTGCTGG GTATTACCAA GGCATCGTTG
GCTACAGAGT CATTTATCTC TGCGGCATCG TTCCAGGAAA CTACTCGCGT ACTTACAGAA
GCGTCTGTTA CTGGCAAAAT CGATAACTTG CGCGGCTTGA AAGAGAACGT GGTTGTTGGT
CGCTTGATTC CTGCGGGTAC CGGTTTGGCT TACCACGCTG AGCGCCGTCG CAAGCGTGAA
GATCAAGCTG GCTCTAAAGC TGGAAGCGAT ACAGTGAGTG CAGCGGAGAT CGAAGCGGCA
TTAACTGAAG CGTTAAAATC TAGCGCATCA TAA
|
|---|
| Protein sequence | MKDLLNLLKN QGPSDEFDGI RIGLASPDMI RSWSYGEVKK PETINYRTFK PEREGLFCAK
VFGPVKDYEC LCGKYKRMKH RGIICEKCGV EVTLAKVRRD RMAHIELASP VAHIWFLKSL
PSRIGLLLDM TLRSIERVLY FESYVVTDPG MTTLEKGQLL TDEQYFEAME EFGDEFEAKM
GAEAIQQLMK DIELEREAQE IREQIPNTNS ETKIKKLSKR LKLLEAFIQS GNKPEWMVLE
ALPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLNAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVTGPT
LRLHQCGLPK KMALELFKPF IFSKLELRGL ATTIKAAKKM VEREEPVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPASGEPII VPSQDVVLGL YWMTRERVND KGEGMIFSDI KEVSRAFYSK
QVGLQARIKV RIDETIMEES GESESSYRMV DTTVGRMLLW EIVPKGIPFE MINKPMVKKA
ISAVINFCYR IVGLKATVIF ADQLMYMGYD FSTKSGSSIG VNDFEIPEAK AGMIERADAE
VKEIEAQYAS GLVAQGEKYN KVIDIWSRAN DLVAKSMMEG ISKETVKNKQ GEDEEQASFN
SVFMYADSGA RGSPAQIRQL AGMRGLMARP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDVVIT EQDCGTDEGL SMTPVIEGGD VIESLGDRIL
GRVVARDVIR PNSDEILVPA GTMIDEKWVE RIESMGIDEV TVRSAISCDA VFGICAQCYG
RDLARGHRAN VGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRASAADSV EVKQEGTVRL
HNIKVVARES GELIAVSRSG ELALADAAGR ERERYKIPYG AVITVKEGEQ VKGGSIIAKW
DPHTHPIVTE VAGRVVLAGM EDGLSIRKQT DELTGLTTIE ILDPSERPSA GKDLKPAVTL
VDENGNELKL ANSEQPAHYM LPGKSIFSLK NGDTVGVGDI IARIPQEGSK TRDITGGLPR
VADLFEARKP KEPSILAEIS GTVSFGKETK GKRRLVITPP NGAVLEDGST HYEVLIPKHR
HLTVFEGETV AKGEVVSDGP SNPHDILRLK GVEALANYIT NEIQDVYRLQ GVKINDKHVE
VIVRQMLRKV EITGMGDSSF VKGEQVEYIA VLQENEKLRA EGRQPARFER QLLGITKASL
ATESFISAAS FQETTRVLTE ASVTGKIDNL RGLKENVVVG RLIPAGTGLA YHAERRRKRE
DQAGSKAGSD TVSAAEIEAA LTEALKSSAS
|
|---|
| |