| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0924 |
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| Symbol | rpoB |
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| ID | 3965565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1187680 |
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| End bp | 1191765 |
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| Gene Length | 4086 bp |
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| Protein Length | 1361 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637919991 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_526398 |
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| Protein GI | 90020571 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.235944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000468436 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTACT CATATACTGA GAAAAAACGT ATCCGAAAGG ATTTTGGCAA GTTGCCAGAC
GTCATGGAAG TGCCATACCT TCTGGCGATT CAACTAGATT CCTACAGAAA ATTTACGCAG
GCTGATACCC CTTTCGATCA AAGAAAGGAT ATGGGCTTGC ACGCTGCATT TAAATCTATA
TTTCCAATAG TGAGCTATTC AGGTAATGCA GCACTTGAGT ATGTCAGTTA TGCCCTAGGT
AAGCCCGTTT TTGACGTAAA AGAATGTGTT TTGCGTGGCG CGACCTATGC AGTGCCTTTA
CGCGTTAAAG TTCGTTTGAT TATCTACGAT AAAGATTCGT CCAGTAAGGC GATCAAGGAT
ATCAAAGAGC AAGAAGTCTA CATGGGCGAA ATTCCGCTTA TGACAGACAA TGGTACATTC
GTAGTGAATG GTACCGAGCG AGTAATTGTA TCTCAGTTAC ACAGATCTCC TGGTGTGTTT
TTCGAGCACG ACAAAGGTAA GACCCACTCT TCGGGCAAGT TGCTCTACTC TGCACGCGTT
ATCCCTTACC GTGGCTCATG GTTAGACTTC GAGTTCGACC CTAAAGATCT AGTTTTCGTA
CGTATTGACC GTCGTCGTAA GTTGCCTGCG TCTATTTTGT TGCGCGCATT GGGCTATACC
ACCGAGCAAA TGCTCGATAT GTTCTACGAA ACAAGCAAGT TCGGTCTTAC CGAAACTGGT
GAGTGCGTAC TTGAATTGGT TCCATCGCGT TTGCGCGGTG ATGTAACAAC GTTTGAAATT
AAAGATAAAG ACGGCAATTT AATTGTTGAA GATGGCCGTC GTATTACTGC TCGTCATATT
CGTCAGTTGG AAAAAGCTGG TGTAACCGAG CTAAGTGTTC CGCACGAATA TATGGTTGGT
CGCGCATTAG CGAAAGATAT TATTAATGCG GAATCCGGCG AAGTTCTATT TGAATGTAAC
ACCGAAATCA CAGACGAAGT TCTTGCGGAG CTTGTTAAGT CTGGCGTTAA AGAATTTGAA
ACGTTGTACA CCAACGAATT AGATTGCGGT CCGTTTATTT CTGACACTTT GCGCAGCGAC
CCTGCTCGCA CTCAGCTTGA AGCGTTGGTA GAAATCTACC GCATGATGCG CCCGGGTGAG
CCGCCAACAA AAGAGTCTGC AGAAACACTG TTCCAAAACT TGTTCTTCAG CTCTGAGCGC
TATGACCTTT CTGCTGTTGG TCGAATGAAG TTCAACCGCC GTTTGGGTCG TGATTCAGAA
GTTGGTTCTG GAACGCTATC TAATGAAGAT ATAGTTGATG TATTAAAAAC GCTTATCGAC
ATTCGCAACG GTAAAGGCGT GGTGGATGAT ATCGATCACC TCGGTAACCG TCGTGTACGT
TCTGTTGGCG AAATGGCCGA GAACCAATTC CGTGTTGGTT TAGTTCGTGT AGAGCGCGCT
GTTAAAGAGC GTCTATCTAT GGCTGAAAGC GAAGGCTTAA TGCCCCAAGA TCTTATTAAC
GCTAAGCCTG TGGCTGCTGC TGTTAAAGAG TTCTTTGGCT CGAGTCAGCT ATCTCAGTTC
ATGGATCAAA ACAACCCACT GTCAGAAGTT ACGCACAAAC GTCGTGTTTC CGCATTAGGC
CCTGGTGGTT TGACGCGTGA GCGTGCAGGC TTTGAGGTGC GAGACGTACA CCCGACTCAC
TACGGTCGTG TATGTCCTAT TGAAACACCT GAAGGTCCAA ACATTGGTTT GATTAACTCG
TTGGCTACCT ATGCGCGTAC CAACAGTTAC GGTTTCTTAG AAAGTCCTCA CCGCAAGGTA
GTTGACGGTA AAGTTACCGA TGAAATCGAA TACCTATCAG CTATTAACGA AGCTAAATTC
GTAATTGCAC AGGCATCTGC TGCGCAAAAC GAAAATGGCG AATTAACAGA AGAGTTGGTA
TCGGTACGAT TCCAAAATGA ATTTACCTTA AAAGGGCCAA GCGAAGTTCA GTACATGGAC
GTGTCTCCAC GTCAGGTTGT ATCTGTTGCT GCGTCTCTTA TCCCGTTCCT AGAGCACGAT
GATGCTAACC GTGCATTGAT GGGATCAAAC ATGCAGCGTC AAGCTGTACC AACACTAAAG
GCGCAAAAGC CGTTAGTGGG TACAGGTATG GAGCGCAATG TTGCTGCCGA CTCTGGTGTA
TGTGTTGTTG CTAAACGCGG CGGTGTTATC GAGCGTGTTG ATGCTGCTCG CATTGTTGTG
CGTGTAGCCG ACGACGAAGT TGAAGCGGGT GAAGCAGGTG TAGATATTTA CAACCTTACC
AAATACACCC GTTCAAACCA GAATACGTGT ATTAATCAGC GTTCAATTGT ACGCACTGGT
GAGAAAGTAT CTCGCGGTGA CATTCTTGCA GACGGCCCAT CCGTAGATTT GGGTGAGTTG
GCACTTGGGC AAAATATGCG TATCGCATTT ATGCCTTGGA ATGGTTACAA CTTTGAGGAT
TCGATCCTCG TTTCTGAGCG TGTAGTTCAG GAGGATCGTT TTACTACTAT TCACATTCAG
GAATTAACCT GTATTGCTCG TGACACCAAA TTGGGTAGCG AAGAAATTAC AGCGGATATT
CCAAACGTAG GTGAAGGTGC TCTATCCAAG TTGGATGAGT CCGGTATTGT TTACGTGGGT
GCGGAAGTAG CTTCTGGCGA TATTCTTGTT GGTAAAGTTA CGCCTAAAGG TGAAACGCAG
CTAACACCAG AAGAAAAGCT CTTACGTGCA ATTTTCGGTG AGAAAGCGTC CGACGTAAAA
GATACTTCAT TGCGCGTGCC TTCAAGTGTT AAGGGTACGG TTATAGATGT GCAGGTATTT
ACGCGCGATG GTTTAGAAAA AGACCAGCGT TCACGTGATA TCGAAAAAGC ACAGCTAGAT
CAAATTCGTA AGGACTTAAA CGAAGAGTAC CGTATTGTTC AAGGCGCTAC TTTTGAGCGT
TTACGCGCTG CACTTGTGGG TAATACCGCA ATGACAGGCA AGGGCGTTGT TAAAGGGCAG
CCGGTAACGG ATGAGATGCT AGACGAGCTT AGCCATGATG ATTGGTTCAA GATTCGTATG
AATGACGATG TGCTCAATGA GCAAATCGAT GCCGCTGAAG TTGCTTTGGC AGAGCGTCGT
AAAGAGCTCG ATGATCGCTT CGAAGATAAA AAAGGCAAGT TGGAAACCGG TGATGATCTG
GCTCCAGGTG TGTTGAAAAT TGTTAAGGTT TACTTGGCAA TTAAACGACG CATTCAGCCT
GGTGATAAGA TGGCCGGTCG TCACGGTAAC AAGGGTGTTA TCTCTGTGAT CATGCCTGTT
GAAGATATGC CATACGACGA AAATGGTAAC CCCATTGATA TCGTATTGAA CCCGCTTGGT
GTTCCTTCTC GAATGAACGT TGGTCAGGTT TTAGAGATGC ACTTAGGTCT TGCAGCTAAG
TCGCTAGGTG AAAAGATTGA TGAAATGTTG AAGCAGCAAA AAGCTGTTGC AGAAATTCGC
CAGTTCTTGG ATCAAATCTA TAACCAAATA GGCGAGTCGT ATAAAGCTGA AGAGCTCGAT
ACGTTTAGCG ACGACGAAAT TATCGAGTTA GCTAACAACT TGCGTGACGG CGTGCCTATG
GCTACCCGTG CGTTCGATGG TGCTAAAGAG AAAGAAATTA AGCAATTGTT AACCTTGGGT
GGTATGCCGG ATTCAGGTCA GATGACTTTG TTTGATGGTC GTACTGGTGA TCCGTTCCAG
CGTCCAACAA CTGTGGGCTA TATGTATATG CTCAAGTTGA ACCACTTGGT TGACGATAAA
ATGCACGCCC GTTCGACTGG TTCCTACAGC CTTGTTACTC AGCAGCCGCT GGGTGGTAAA
GCGCAGTTTG GTGGTCAGCG ATTTGGTGAG ATGGAGGTGT GGGCCCTCGA AGCATATGGT
GCAGCGTATA CGTTGCAAGA AATGCTAACC GTTAAATCGG ATGACGTGGC CGGTCGTACT
AAGATGTATA AAAACATCGT AGACGGTGAC CACCGCATGG AGCCTGGCAT GCCTGAGTCC
TTTAACGTAT TGGTTAAAGA GATTCGCTCA CTCGGTATTA ATATCGAGCT AGAGCAGGAC
AACTAA
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| Protein sequence | MAYSYTEKKR IRKDFGKLPD VMEVPYLLAI QLDSYRKFTQ ADTPFDQRKD MGLHAAFKSI
FPIVSYSGNA ALEYVSYALG KPVFDVKECV LRGATYAVPL RVKVRLIIYD KDSSSKAIKD
IKEQEVYMGE IPLMTDNGTF VVNGTERVIV SQLHRSPGVF FEHDKGKTHS SGKLLYSARV
IPYRGSWLDF EFDPKDLVFV RIDRRRKLPA SILLRALGYT TEQMLDMFYE TSKFGLTETG
ECVLELVPSR LRGDVTTFEI KDKDGNLIVE DGRRITARHI RQLEKAGVTE LSVPHEYMVG
RALAKDIINA ESGEVLFECN TEITDEVLAE LVKSGVKEFE TLYTNELDCG PFISDTLRSD
PARTQLEALV EIYRMMRPGE PPTKESAETL FQNLFFSSER YDLSAVGRMK FNRRLGRDSE
VGSGTLSNED IVDVLKTLID IRNGKGVVDD IDHLGNRRVR SVGEMAENQF RVGLVRVERA
VKERLSMAES EGLMPQDLIN AKPVAAAVKE FFGSSQLSQF MDQNNPLSEV THKRRVSALG
PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLINS LATYARTNSY GFLESPHRKV
VDGKVTDEIE YLSAINEAKF VIAQASAAQN ENGELTEELV SVRFQNEFTL KGPSEVQYMD
VSPRQVVSVA ASLIPFLEHD DANRALMGSN MQRQAVPTLK AQKPLVGTGM ERNVAADSGV
CVVAKRGGVI ERVDAARIVV RVADDEVEAG EAGVDIYNLT KYTRSNQNTC INQRSIVRTG
EKVSRGDILA DGPSVDLGEL ALGQNMRIAF MPWNGYNFED SILVSERVVQ EDRFTTIHIQ
ELTCIARDTK LGSEEITADI PNVGEGALSK LDESGIVYVG AEVASGDILV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSSV KGTVIDVQVF TRDGLEKDQR SRDIEKAQLD
QIRKDLNEEY RIVQGATFER LRAALVGNTA MTGKGVVKGQ PVTDEMLDEL SHDDWFKIRM
NDDVLNEQID AAEVALAERR KELDDRFEDK KGKLETGDDL APGVLKIVKV YLAIKRRIQP
GDKMAGRHGN KGVISVIMPV EDMPYDENGN PIDIVLNPLG VPSRMNVGQV LEMHLGLAAK
SLGEKIDEML KQQKAVAEIR QFLDQIYNQI GESYKAEELD TFSDDEIIEL ANNLRDGVPM
ATRAFDGAKE KEIKQLLTLG GMPDSGQMTL FDGRTGDPFQ RPTTVGYMYM LKLNHLVDDK
MHARSTGSYS LVTQQPLGGK AQFGGQRFGE MEVWALEAYG AAYTLQEMLT VKSDDVAGRT
KMYKNIVDGD HRMEPGMPES FNVLVKEIRS LGINIELEQD N
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