| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0921 |
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| Symbol | rplA |
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| ID | 3965562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1185507 |
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| End bp | 1186202 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637919988 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_526395 |
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| Protein GI | 90020568 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.000251506 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000172539 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCTAAAT TAAGCAAACG TCAAAAACTT ATTAACGAAA AAGTAGACTC AACTAAAGCA
TACAGCATCG AAGAAGCTGT AGCCTTGTTG CAAGAGCTAT CTAAAGTTAA ATTTTCTGAA
ACTGTTGATG CAGCGATTAA CTTGGGTATT GACCCACGTA AATCTGATCA AGCAGTTCGC
GGCGCAACTA GCCTACCTCA CGGTACTGGT AAAGATGTTC GCGTTGCAGT ATTCACACAA
GGTGCTAACG CTGAAGCAGC TAAAGAAGCT GGTGCAGAAT TTGTTGGTAT GGAAGACCTT
GCCGAGCAAA TTAAAGGCGG CATGATGGAT TTCGACGTTG TGATTGCAGA TCCAGCGGCC
ATGCGTGTAG TAGGTATGTT AGGTCAAGTG TTGGGTCCAC GCGGCTTAAT GCCAAACCCA
AAAACTGGCA CCGTAACTCC TGATGTTGTG GGTGCAGTTA AAAATGCTAA AGCTGGTCAG
GTTCGTTACC GTGCAGACAA AGGCGGTATC ATCCACGGCG GTATTGGCAA AATTTCTTTT
GATGCAAATG CAATCAAAGA AAACTTAGAA GCATTAATTT CAGACTTGAA AAAGGCTAAA
CCTGCTTCGG CTAAAGGTAT TTACGTGAAA CGAGTTTCAC TAAGCACCAC TATGGGCCCA
GGTTTGACCA TCGATCAGTC ATCTTTAACT GCTTAA
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| Protein sequence | MAKLSKRQKL INEKVDSTKA YSIEEAVALL QELSKVKFSE TVDAAINLGI DPRKSDQAVR
GATSLPHGTG KDVRVAVFTQ GANAEAAKEA GAEFVGMEDL AEQIKGGMMD FDVVIADPAA
MRVVGMLGQV LGPRGLMPNP KTGTVTPDVV GAVKNAKAGQ VRYRADKGGI IHGGIGKISF
DANAIKENLE ALISDLKKAK PASAKGIYVK RVSLSTTMGP GLTIDQSSLT A
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