| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0919 |
|---|
| Symbol | |
|---|
| ID | 3965560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1184379 |
|---|
| End bp | 1184912 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637919986 |
|---|
| Product | transcription antitermination protein nusG |
|---|
| Protein accession | YP_526393 |
|---|
| Protein GI | 90020566 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0250] Transcription antiterminator |
|---|
| TIGRFAM ID | [TIGR00922] transcription termination/antitermination factor NusG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00000000542135 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000170909 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC GCTGGTACGT AGTACACGCC TATTCAGGCT ACGAGAAAAA AGTGGCGGCA
GCCATCAAAG AGCGTATTGA GCTTAATAAT ATGCAAGATA GCTTTGGTGA TGTGTTAGTG
CCCACTGAAG AAGTTATAGA GATTCGCGCA GGTCAAAAGC GTAAATCTGA AAGAAAGTTT
TTCCCTGGTT ATGTGTTAGT TCAAATGGAG CTAACCGACG ATGCATGGCA CCTTGTTAAA
GAGACGCCGC GCGTAATGGG GTTCATTGGT GGCAAGGCGG ATCGCCCTGC TCCAATTACA
GAAAAAGAGG CGCAGTTAAT TCTGCAGCGC GTTGATGACT CTGCTGATAA GCCTAAGCCT
AAAACATTGT TTGAGCCAGG TGAGATGGTG CGAGTTACCG ATGGTCCATT TAACGACTTT
AACGGTGTTG TTGAAGAAGT TAACTACGAG AAGAGCAAGC TGCAAGTGGC TGTTCTTATC
TTTGGACGGT CAACGCCGGT TGAGTTAGAG TTCGGGCAGG TAGAGAAAGT CTAA
|
|---|
| Protein sequence | MAKRWYVVHA YSGYEKKVAA AIKERIELNN MQDSFGDVLV PTEEVIEIRA GQKRKSERKF
FPGYVLVQME LTDDAWHLVK ETPRVMGFIG GKADRPAPIT EKEAQLILQR VDDSADKPKP
KTLFEPGEMV RVTDGPFNDF NGVVEEVNYE KSKLQVAVLI FGRSTPVELE FGQVEKV
|
|---|
| |