| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0915 |
|---|
| Symbol | |
|---|
| ID | 3965551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1180564 |
|---|
| End bp | 1181562 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637919977 |
|---|
| Product | biotin--(acetyl-CoA-carboxylase) ligase |
|---|
| Protein accession | YP_526389 |
|---|
| Protein GI | 90020562 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
|---|
| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.277179 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000181101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGT CTTGGGGGCG GCTGTTAACT ATTCTTGCAA ATGGGGAGTG TCATTCTGGT
GAGGCGCTTG GGGTTGAGCT AGGTGTTAGT CGCGCGGCTA TTTGGAAGCA AATTCAGGCG
ATGGCACAAG TGGGGATTCA TGTCGAAAGC GTGCGCGGTG CTGGTTACTG CTTGCCCGGC
GGAATGAGCC TGCTAAGTGA AGGCGAAATA TTGAAGGCGC TTGAAGGTAT GCCTGCAGGA
GCTCAGGGGC AGCTGCAGTG TGTGGTGTAC TCGCAGCTTG ATTCTACCAA TGAGCGAGTA
TTACAGCGCA TTCGAGCTGG CGAGTCTGGG CATGGCTACG CCTGTTTGGC CGAGCTGCAA
TCTGCTGGTC GGGGCCGTCG GGGACGGCAG TGGCAAAGCC CCTACGGTCG CAATGTATAC
CTCTCGCTCG GCTGGCGCTT CGAGCGCGGG GTGGCGGCTA TGGAGGGCTT GAGTTTAGCC
ATTGGGGTAG CCGTGTGCAG GGCGCTTGAT AAAAATTTTT CGCTAAAAGC CGAATTGAAG
TGGCCCAACG ATGTATTGCT CGCGGGGCGC AAGTTAGGGG GGATTTTGCT GGAGGTAGCA
GGCGATTTAA GCGGTGAATG TTATGTTGTG GCGGGGGTTG GGCTAAATGT ATCTATGCCT
AGCGCAGCTG CGCAAGCCAT TGATCAACCG TGGATTGACG TGGCCTCGTG TATCGAAAGT
ATAGGGCTGA TAGATCGCAA CCAGCTGGCT GCCGCGCTTT TATTTGAATT AAGTTGTGTA
TTAAGTGATT ACGAGCAGCG TGGTTTTGCT GCGTATAAAA ATGAGTGGAA AATGCGTTGC
CCGCATATTG GGGCTAGTGT GCAACTTAGC TCTCATTCTA ATACCTTGGT GGGCGAAATG
GTTGGTGTGG ATGATACGGG TGCGCTGTTG TTGTTGGTTG ATGGCGAATT AAAGCCCTAC
AGTGGTGGCG AGCTAAGTTT AAGGCTGGCT AGCTCATGA
|
|---|
| Protein sequence | MTESWGRLLT ILANGECHSG EALGVELGVS RAAIWKQIQA MAQVGIHVES VRGAGYCLPG
GMSLLSEGEI LKALEGMPAG AQGQLQCVVY SQLDSTNERV LQRIRAGESG HGYACLAELQ
SAGRGRRGRQ WQSPYGRNVY LSLGWRFERG VAAMEGLSLA IGVAVCRALD KNFSLKAELK
WPNDVLLAGR KLGGILLEVA GDLSGECYVV AGVGLNVSMP SAAAQAIDQP WIDVASCIES
IGLIDRNQLA AALLFELSCV LSDYEQRGFA AYKNEWKMRC PHIGASVQLS SHSNTLVGEM
VGVDDTGALL LLVDGELKPY SGGELSLRLA SS
|
|---|
| |