Gene Sde_0901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0901 
Symbol 
ID3965498 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1163480 
End bp1164781 
Gene Length1302 bp 
Protein Length433 aa 
Translation table11 
GC content48% 
IMG OID637919963 
ProducttRNA-processing RNAse BN 
Protein accessionYP_526375 
Protein GI90020548 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.562692 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000115397 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTGGGATA TTGCCAAAGT TAAAGCATCA ATTAAGCCGT TTGTATTCGC ATTAGGGCGT 
TTTTTCGGCA ACTTATACAA GGAGTTTGTC GAGAAGGGCT GCCAAAAGAG TGCGGCTGCG
CTCACTTATA TGTCGCTGTT CGCCATGGTG CCATTAATGG CGGTGTTTTA TTCCATGTTC
TCTATGTTTC CCGCGTTCGA CGGGGTAGCA CAGCAGCTGC AAGATATGAT TTTTTCTCAC
TTTGTGCCCG AAACTGGCAG TGAGGTGCAG CAGTACTTGG CCAATTTCTC TCAGCAAGCA
CGCAATTTGA GTGCCGCTGG TGCCGGCCTA TTGGTGGTAA CGGCCTATTT GATGCTCACC
AACATAGAAA AAACGTTTAA TGCTATTTGG GGGGTTAAAG CGGCGCGCAG AGGCATTACC
AGCTTTCTTT TGTACTGGGC TGTGTTGACT ATTGGCCCTC TCTTGCTAGG CGCCGGCTTG
GCAATGAGCA CCTATTTACT ATCACTTAAA ATAATTGTGA ATGAGTACGA TGCAATAGGC
GTAACCAATT TATTTTTTAG CTATTTGCCG CTTTTTACCA CCAGCGCCGC TTTTACACTG
CTTTTCGCCG CCGTACCCAA CTGTAGAGTA CCTATTAAAT TTGCGCTTAT TGGTGGTATT
CTTACGGCTG TTTGCTTCGA ACTGCTAAAA ATTGGTTTCG GTTGGGTTGT GGCAAATTCC
AGTTTTAGCC AAATATACGG TGCATTCGCG GTAGTGCCCT TATTCTTACT GTGGGTAAAC
CTGTTGTGGA TGATTATTTT GGGGGGCGCG GTATTTGTGC GCACATTGGC AGAGCGCGGC
TATGCCCATT CATCTTCTCG CTATACCGAC CTTATGGCCG TGTTACAGAT ACTGGCCATA
TTCAAAGAAA AGTCGCGTAC TGGCGAAAGC GTGACGGATG GTGATTGTGT GCGTGCTGGT
GTAGGTCTTG TTCACTGGCA GCAGCTGCGT TCTAAGCTTA CCGAAAAAAA CTGGATAGCC
GTTACCGATA GCGGCTTTTA CGTGCTGTGT CGCGATTTAA GCGACGTAAC CGTATGGGAT
GCAGCTTGTT TGGTGGGGGC AACCCTTGCC GAGCTAGAAA AGACGCCCAG AAAGCGCTCG
CGCGATGGCG AGTGGCGAGA GGAGTTTAGC AAGCGCAAAG ATTTATTAGC CGACGATGCG
AAAGCCCATT ACGGGATTAG CCTACAGGCC TTATTTAGCC CACAGCAAGT CGAAGAGCTG
CTTGAAGAAC TACCTGATGA GCAATCCGAA AAGTCAAAGT AG
 
Protein sequence
MWDIAKVKAS IKPFVFALGR FFGNLYKEFV EKGCQKSAAA LTYMSLFAMV PLMAVFYSMF 
SMFPAFDGVA QQLQDMIFSH FVPETGSEVQ QYLANFSQQA RNLSAAGAGL LVVTAYLMLT
NIEKTFNAIW GVKAARRGIT SFLLYWAVLT IGPLLLGAGL AMSTYLLSLK IIVNEYDAIG
VTNLFFSYLP LFTTSAAFTL LFAAVPNCRV PIKFALIGGI LTAVCFELLK IGFGWVVANS
SFSQIYGAFA VVPLFLLWVN LLWMIILGGA VFVRTLAERG YAHSSSRYTD LMAVLQILAI
FKEKSRTGES VTDGDCVRAG VGLVHWQQLR SKLTEKNWIA VTDSGFYVLC RDLSDVTVWD
AACLVGATLA ELEKTPRKRS RDGEWREEFS KRKDLLADDA KAHYGISLQA LFSPQQVEEL
LEELPDEQSE KSK