Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0901 |
Symbol | |
ID | 3965498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1163480 |
End bp | 1164781 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637919963 |
Product | tRNA-processing RNAse BN |
Protein accession | YP_526375 |
Protein GI | 90020548 |
COG category | [S] Function unknown |
COG ID | [COG1295] Predicted membrane protein |
TIGRFAM ID | [TIGR00765] YihY family protein (not ribonuclease BN) |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.562692 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000115397 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTGGGATA TTGCCAAAGT TAAAGCATCA ATTAAGCCGT TTGTATTCGC ATTAGGGCGT TTTTTCGGCA ACTTATACAA GGAGTTTGTC GAGAAGGGCT GCCAAAAGAG TGCGGCTGCG CTCACTTATA TGTCGCTGTT CGCCATGGTG CCATTAATGG CGGTGTTTTA TTCCATGTTC TCTATGTTTC CCGCGTTCGA CGGGGTAGCA CAGCAGCTGC AAGATATGAT TTTTTCTCAC TTTGTGCCCG AAACTGGCAG TGAGGTGCAG CAGTACTTGG CCAATTTCTC TCAGCAAGCA CGCAATTTGA GTGCCGCTGG TGCCGGCCTA TTGGTGGTAA CGGCCTATTT GATGCTCACC AACATAGAAA AAACGTTTAA TGCTATTTGG GGGGTTAAAG CGGCGCGCAG AGGCATTACC AGCTTTCTTT TGTACTGGGC TGTGTTGACT ATTGGCCCTC TCTTGCTAGG CGCCGGCTTG GCAATGAGCA CCTATTTACT ATCACTTAAA ATAATTGTGA ATGAGTACGA TGCAATAGGC GTAACCAATT TATTTTTTAG CTATTTGCCG CTTTTTACCA CCAGCGCCGC TTTTACACTG CTTTTCGCCG CCGTACCCAA CTGTAGAGTA CCTATTAAAT TTGCGCTTAT TGGTGGTATT CTTACGGCTG TTTGCTTCGA ACTGCTAAAA ATTGGTTTCG GTTGGGTTGT GGCAAATTCC AGTTTTAGCC AAATATACGG TGCATTCGCG GTAGTGCCCT TATTCTTACT GTGGGTAAAC CTGTTGTGGA TGATTATTTT GGGGGGCGCG GTATTTGTGC GCACATTGGC AGAGCGCGGC TATGCCCATT CATCTTCTCG CTATACCGAC CTTATGGCCG TGTTACAGAT ACTGGCCATA TTCAAAGAAA AGTCGCGTAC TGGCGAAAGC GTGACGGATG GTGATTGTGT GCGTGCTGGT GTAGGTCTTG TTCACTGGCA GCAGCTGCGT TCTAAGCTTA CCGAAAAAAA CTGGATAGCC GTTACCGATA GCGGCTTTTA CGTGCTGTGT CGCGATTTAA GCGACGTAAC CGTATGGGAT GCAGCTTGTT TGGTGGGGGC AACCCTTGCC GAGCTAGAAA AGACGCCCAG AAAGCGCTCG CGCGATGGCG AGTGGCGAGA GGAGTTTAGC AAGCGCAAAG ATTTATTAGC CGACGATGCG AAAGCCCATT ACGGGATTAG CCTACAGGCC TTATTTAGCC CACAGCAAGT CGAAGAGCTG CTTGAAGAAC TACCTGATGA GCAATCCGAA AAGTCAAAGT AG
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Protein sequence | MWDIAKVKAS IKPFVFALGR FFGNLYKEFV EKGCQKSAAA LTYMSLFAMV PLMAVFYSMF SMFPAFDGVA QQLQDMIFSH FVPETGSEVQ QYLANFSQQA RNLSAAGAGL LVVTAYLMLT NIEKTFNAIW GVKAARRGIT SFLLYWAVLT IGPLLLGAGL AMSTYLLSLK IIVNEYDAIG VTNLFFSYLP LFTTSAAFTL LFAAVPNCRV PIKFALIGGI LTAVCFELLK IGFGWVVANS SFSQIYGAFA VVPLFLLWVN LLWMIILGGA VFVRTLAERG YAHSSSRYTD LMAVLQILAI FKEKSRTGES VTDGDCVRAG VGLVHWQQLR SKLTEKNWIA VTDSGFYVLC RDLSDVTVWD AACLVGATLA ELEKTPRKRS RDGEWREEFS KRKDLLADDA KAHYGISLQA LFSPQQVEEL LEELPDEQSE KSK
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