Gene Sde_0892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0892 
Symbol 
ID3965489 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1153983 
End bp1156064 
Gene Length2082 bp 
Protein Length693 aa 
Translation table11 
GC content47% 
IMG OID637919954 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_526366 
Protein GI90020539 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.914859 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000172581 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCAAAAAC AAGGCTTAAG CGCGAGTGCA AAAATAACCC TAATACTGCT GTTATTGGCA 
GCGGTTGTAT GCGCGGTGGC ACTAGTAATT ACTTTGCGAT CAGTTGACGC AGTTAAACAG
CAGCACCAAC AGCAGGTTGA AAGATCGTTA TCCGCAATTA CTCAGTCCCT TAGCCAGCGC
TTGGCCGGTG GTGCAGAGCT GCACTCGTGG CTAAACCGAG CCGCAACGCA CAATAACGTT
GTGGCTGCGG TTGTAGTGAA TAGGCAAAGT AAAGTGCTGG CGCAGGCCAA TATGCCAGAG
CTTATGCAAG CAGCGCCGAT GACCATGAAA GCGTTCGAAG CCGTAATTGC TGATCGCAAT
TATTCCTTTT CTCCTCAAAT TGTATCTTCG CCTATTATCA TGCTCGATGA GGGGGTAGCG
ATGGATGCGG GCAATAAGCT TATCACTGTA TTCGACAGCC GCGGCTTGGA GGCTGTGCAG
TCAGCACTTT GGAATACTTT TATCGTAGTG GCTGTTGCAA TATTTGCAGT GGTTGCTTGC
GCGGGGTTGC TTATACACCG TTGGGTGGCG GCTCCGCTTA AACGAATAGA TAAAGCGCTA
ACTGTAGCTG GGCAAACAGG TAATTTTGCC TGTTTTATAG AAGAGGATAC CAACGCCAAT
ATACGTAAGT TATCACTTGG TTTAAACGCG TTCTTAAGCA AAGTGCGCAC GCGAGAAATG
CATTTGGAAA AACGTGTGCG CCAGCGCAGC GATGATTTAA AACGTTTGTC TGACGATTTA
AAGTACCGCG CATTACACGA CACCTTAACG GGCCTGCCAA ACCGCTCTTT ATTAGAAGAT
GAGATTATCC GCGCGGCTGC GGCTGCAGAT AGAAAGGGAC ACTACTTTGC CGTTTTTATG
ATGGACCTAG ACGACTTTAA AGTGGTGAAC GACAGTTTTG GGCACGACTT TGGCGACCAG
CTACTTAAAC AAATAGCGGC TAGGTTGCAA AATAATTTGC GCGGCGAAGA TAGGGTTTAC
CGCTATGGTG GCGACGAATT TGTCGCTGTG GTTGAAGGGC TAAACTCCAT GATAGATGTG
GAGACAATTG CGAAGGGCAT TCTTAAAGAG CTTAATAACG ATTTAGAGCT AATGGGCCGC
GAGTTAACGG TAAGTGTGAG TGTAGGGGCG AGTGTATACC CTAAGCACGG TAGAACCTTA
TCCGAGCTGG TGCACAATGC CGATGTTGCC ATGTATGCTG CTAAAGACAA AGGCAAAAAC
AGCTTTGTTA TTTACCACGA CGACATTGAA GAAAATGAAT CCCATACCGA TTGGATTATA
AAAGAGTTGC CAAAAGCCAT GAGCAACAAC GAGCTTTTGG TTTACTACCA ACCCAATGTG
AAAGTCGAGA AGGGGATGTA TCAGTTGGTG GGAGCCGAGG CCCTAGTGCG TTGGCGACAC
CCCGAAAAAG GCGTACTTAT GCCGCAAGAA TTCGTGGCCC ATGCAGAAGA GTACAGCTTA
ATTACCCAGT TGGATTTTTA CGTGTTGCAC AGCGCCTGTG TGCAGGCGCG AGTATGGTGC
GATAAGGGAA TTCCTATTCC CGTGGCTGTG AATATGTGCG CCGAGCACTT TAAGTCTTAT
AGGGTGGTGG AGCGCATTAA AAGTATATTG GACGAAGTCG GCTTGCCGCC CCATTTACTC
TGCTTAGAGT TGCGAGACTC TAGCGATATG CGCGATTGTT TTGAGGCCAA TAAAATAATG
GCAAGCTTGC ACGACTTAGG TGTAAAAATT GCCCTAGATA ATTACGGTAT AGGTTCAACC
TCTATTAATT ATCTGCGGAC AATACCGTTG GATTATTTAA AGTTAGATAA ATCGATAGTG
CGCGATGTGA ACCTTAGCGA AAAAGACAAA AATTTAATTA AGGGTATGGT CGACTTGGCT
AGAGATTTAA ATATTGGTTT GGTTGCCGAA GGTGTAGAAG ACGAAGATCA AGTAACAAGT
TTGGCCGGAA TAGGGTGCGA TACTATGCAG GGGTTTTACT TTTGCGAGCC GCGGGATTTG
GCTGGGTTTG TACAATGGGT GCAAGAGAGC ACCCATCACT AG
 
Protein sequence
MQKQGLSASA KITLILLLLA AVVCAVALVI TLRSVDAVKQ QHQQQVERSL SAITQSLSQR 
LAGGAELHSW LNRAATHNNV VAAVVVNRQS KVLAQANMPE LMQAAPMTMK AFEAVIADRN
YSFSPQIVSS PIIMLDEGVA MDAGNKLITV FDSRGLEAVQ SALWNTFIVV AVAIFAVVAC
AGLLIHRWVA APLKRIDKAL TVAGQTGNFA CFIEEDTNAN IRKLSLGLNA FLSKVRTREM
HLEKRVRQRS DDLKRLSDDL KYRALHDTLT GLPNRSLLED EIIRAAAAAD RKGHYFAVFM
MDLDDFKVVN DSFGHDFGDQ LLKQIAARLQ NNLRGEDRVY RYGGDEFVAV VEGLNSMIDV
ETIAKGILKE LNNDLELMGR ELTVSVSVGA SVYPKHGRTL SELVHNADVA MYAAKDKGKN
SFVIYHDDIE ENESHTDWII KELPKAMSNN ELLVYYQPNV KVEKGMYQLV GAEALVRWRH
PEKGVLMPQE FVAHAEEYSL ITQLDFYVLH SACVQARVWC DKGIPIPVAV NMCAEHFKSY
RVVERIKSIL DEVGLPPHLL CLELRDSSDM RDCFEANKIM ASLHDLGVKI ALDNYGIGST
SINYLRTIPL DYLKLDKSIV RDVNLSEKDK NLIKGMVDLA RDLNIGLVAE GVEDEDQVTS
LAGIGCDTMQ GFYFCEPRDL AGFVQWVQES THH