Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0892 |
Symbol | |
ID | 3965489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1153983 |
End bp | 1156064 |
Gene Length | 2082 bp |
Protein Length | 693 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637919954 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_526366 |
Protein GI | 90020539 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.914859 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000172581 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAAAAAC AAGGCTTAAG CGCGAGTGCA AAAATAACCC TAATACTGCT GTTATTGGCA GCGGTTGTAT GCGCGGTGGC ACTAGTAATT ACTTTGCGAT CAGTTGACGC AGTTAAACAG CAGCACCAAC AGCAGGTTGA AAGATCGTTA TCCGCAATTA CTCAGTCCCT TAGCCAGCGC TTGGCCGGTG GTGCAGAGCT GCACTCGTGG CTAAACCGAG CCGCAACGCA CAATAACGTT GTGGCTGCGG TTGTAGTGAA TAGGCAAAGT AAAGTGCTGG CGCAGGCCAA TATGCCAGAG CTTATGCAAG CAGCGCCGAT GACCATGAAA GCGTTCGAAG CCGTAATTGC TGATCGCAAT TATTCCTTTT CTCCTCAAAT TGTATCTTCG CCTATTATCA TGCTCGATGA GGGGGTAGCG ATGGATGCGG GCAATAAGCT TATCACTGTA TTCGACAGCC GCGGCTTGGA GGCTGTGCAG TCAGCACTTT GGAATACTTT TATCGTAGTG GCTGTTGCAA TATTTGCAGT GGTTGCTTGC GCGGGGTTGC TTATACACCG TTGGGTGGCG GCTCCGCTTA AACGAATAGA TAAAGCGCTA ACTGTAGCTG GGCAAACAGG TAATTTTGCC TGTTTTATAG AAGAGGATAC CAACGCCAAT ATACGTAAGT TATCACTTGG TTTAAACGCG TTCTTAAGCA AAGTGCGCAC GCGAGAAATG CATTTGGAAA AACGTGTGCG CCAGCGCAGC GATGATTTAA AACGTTTGTC TGACGATTTA AAGTACCGCG CATTACACGA CACCTTAACG GGCCTGCCAA ACCGCTCTTT ATTAGAAGAT GAGATTATCC GCGCGGCTGC GGCTGCAGAT AGAAAGGGAC ACTACTTTGC CGTTTTTATG ATGGACCTAG ACGACTTTAA AGTGGTGAAC GACAGTTTTG GGCACGACTT TGGCGACCAG CTACTTAAAC AAATAGCGGC TAGGTTGCAA AATAATTTGC GCGGCGAAGA TAGGGTTTAC CGCTATGGTG GCGACGAATT TGTCGCTGTG GTTGAAGGGC TAAACTCCAT GATAGATGTG GAGACAATTG CGAAGGGCAT TCTTAAAGAG CTTAATAACG ATTTAGAGCT AATGGGCCGC GAGTTAACGG TAAGTGTGAG TGTAGGGGCG AGTGTATACC CTAAGCACGG TAGAACCTTA TCCGAGCTGG TGCACAATGC CGATGTTGCC ATGTATGCTG CTAAAGACAA AGGCAAAAAC AGCTTTGTTA TTTACCACGA CGACATTGAA GAAAATGAAT CCCATACCGA TTGGATTATA AAAGAGTTGC CAAAAGCCAT GAGCAACAAC GAGCTTTTGG TTTACTACCA ACCCAATGTG AAAGTCGAGA AGGGGATGTA TCAGTTGGTG GGAGCCGAGG CCCTAGTGCG TTGGCGACAC CCCGAAAAAG GCGTACTTAT GCCGCAAGAA TTCGTGGCCC ATGCAGAAGA GTACAGCTTA ATTACCCAGT TGGATTTTTA CGTGTTGCAC AGCGCCTGTG TGCAGGCGCG AGTATGGTGC GATAAGGGAA TTCCTATTCC CGTGGCTGTG AATATGTGCG CCGAGCACTT TAAGTCTTAT AGGGTGGTGG AGCGCATTAA AAGTATATTG GACGAAGTCG GCTTGCCGCC CCATTTACTC TGCTTAGAGT TGCGAGACTC TAGCGATATG CGCGATTGTT TTGAGGCCAA TAAAATAATG GCAAGCTTGC ACGACTTAGG TGTAAAAATT GCCCTAGATA ATTACGGTAT AGGTTCAACC TCTATTAATT ATCTGCGGAC AATACCGTTG GATTATTTAA AGTTAGATAA ATCGATAGTG CGCGATGTGA ACCTTAGCGA AAAAGACAAA AATTTAATTA AGGGTATGGT CGACTTGGCT AGAGATTTAA ATATTGGTTT GGTTGCCGAA GGTGTAGAAG ACGAAGATCA AGTAACAAGT TTGGCCGGAA TAGGGTGCGA TACTATGCAG GGGTTTTACT TTTGCGAGCC GCGGGATTTG GCTGGGTTTG TACAATGGGT GCAAGAGAGC ACCCATCACT AG
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Protein sequence | MQKQGLSASA KITLILLLLA AVVCAVALVI TLRSVDAVKQ QHQQQVERSL SAITQSLSQR LAGGAELHSW LNRAATHNNV VAAVVVNRQS KVLAQANMPE LMQAAPMTMK AFEAVIADRN YSFSPQIVSS PIIMLDEGVA MDAGNKLITV FDSRGLEAVQ SALWNTFIVV AVAIFAVVAC AGLLIHRWVA APLKRIDKAL TVAGQTGNFA CFIEEDTNAN IRKLSLGLNA FLSKVRTREM HLEKRVRQRS DDLKRLSDDL KYRALHDTLT GLPNRSLLED EIIRAAAAAD RKGHYFAVFM MDLDDFKVVN DSFGHDFGDQ LLKQIAARLQ NNLRGEDRVY RYGGDEFVAV VEGLNSMIDV ETIAKGILKE LNNDLELMGR ELTVSVSVGA SVYPKHGRTL SELVHNADVA MYAAKDKGKN SFVIYHDDIE ENESHTDWII KELPKAMSNN ELLVYYQPNV KVEKGMYQLV GAEALVRWRH PEKGVLMPQE FVAHAEEYSL ITQLDFYVLH SACVQARVWC DKGIPIPVAV NMCAEHFKSY RVVERIKSIL DEVGLPPHLL CLELRDSSDM RDCFEANKIM ASLHDLGVKI ALDNYGIGST SINYLRTIPL DYLKLDKSIV RDVNLSEKDK NLIKGMVDLA RDLNIGLVAE GVEDEDQVTS LAGIGCDTMQ GFYFCEPRDL AGFVQWVQES THH
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