Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0884 |
Symbol | |
ID | 3968818 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1141943 |
End bp | 1143586 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637919946 |
Product | chaperonin, 60 kDa |
Protein accession | YP_526358 |
Protein GI | 90020531 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
TIGRFAM ID | [TIGR02348] chaperonin GroL |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00000145695 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000472619 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGAAAA TTGTAAAGTT TGGTGACGAA GCCCGTCAAA AAATGTTGGC TGGTGTAAAT GTCTTGGCCG ACGCTGTAAA AACTACCTTA GGCCCTAAAG GTCGCAACGT AGTATTAGAT AAGTCTTTTG GTGCACCGAC TGTAACTAAA GATGGTGTAT CTGTTGCGAA AGAAATCGAA TTAGAAGATA AATTCGAAAA TATGGGCGCA CAAATGGTTA AAGAAGTAGC CTCTAAAGCG TCTGACGATG CTGGTGACGG TACTACTACT GCAACCGTAT TGGCTCAAGC CATTGTTAAC GAAGGCCTAA AGTCCGTTGC TGCTGGCATG AACCCAATGG ATTTAAAGCG CGGTATCGAC AAAGCTGTTA ACGCTGCTGT TGCTCACATC AAATCTATCG CGCAACCATG TGAAGATGGC AAGTCAATCG CTCAGGTTGG TACTATCTCT GCAAACAGCG ATTCTCACGT TGGCGACATC ATTGCAGAAG CAATGGCCAA AGTGGGTAAA GAAGGCGTTA TTACTGTAGA AGAAGGTAGC GGCTTAGAGA ACGAATTGGA CGTAGTAGAA GGTATGCAGT TTGACCGCGG TTACCTTTCT CCTTACTTCA TCAACAACCA AGAAAGCATG AGCGTTGAAA TTGAACAGCC ATACATTCTG CTTGTTGATA AAAAAATCTC TAACATTCGC GAATTGTTAC CAGTATTAGA AGCTGTTGCT AAGTCTGGCA AGCCATTGGT TATTGTTGCT GAAGACGTAG AAGGCGAAGC ATTAGCTACT TTGGTTGTAA ACAACATGCG CGGTATTGTT AAAGTGACTG CGTGTAAAGC ACCTGGTTTT GGCGACCGTC GCAAAGCGAT GTTGCAAGAT ATTGCAATCT TAACTGGTGG TACCGTAATT TCTGAAGAAG TGGGCTTAGA TCTAGAAAGC GCTACTTTGG AGCACTTAGG TTCTGCTAAG CGTGTAACCA TGACCAAAGA AAACAGCACT ATCGTTGATG GCGCAGGCGT TGCTGCAGAT ATCGAATCTC GTGTTGCTCA AATTCGCGCG CAAATCGAAG AAACTTCTTC TGATTACGAT CGTGAAAAAC TTCAAGAGCG TGTTGCTAAG CTTGCTGGCG GTGTTGCCGT TATTAAAGTT GGCGCCATGA CCGAAGTTGA AATGAAAGAG AAAAAAGCAC GCGTAGAAGA TGCGTTACAC GCAACACGCG CTGCGGTTGA AGAGGGTGTT GTACCTGGAG GCGGTACTGC GCTTATCCGT GCAGCAGCGG CAATTGCCGA CCTTAAAGGC GACAACGAAG ACCAGAACGC TGGTATTGGT ATTGCTATCC GTGCTCTTGA AGCGCCATTG CGTCAAATCG TTTCTAACGC TGGCGGCGAA GCGTCTGTTG TTGCAGATAA AGTTAAAAAC GGCGAAGGCA ACTTCGGCTT TAACGCGGCA TCTGGCGAAT ACGGCGATAT GCTTGAGTTT GGTATTCTTG ACCCAGCTAA AGTTTCGCGC ACTGCCATTC AAGCTGCAGG CTCAATTGCC GGCTTGATGA TCACCACCGA AGCAATGATT GCTGACAAGC CTTCTGAAGG CGGCGCTGCT GCACCAGACA TGGGTGGCAT GGGTGGAATG GGCGGCATGG GCGGCATGAT GTAA
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Protein sequence | MAKIVKFGDE ARQKMLAGVN VLADAVKTTL GPKGRNVVLD KSFGAPTVTK DGVSVAKEIE LEDKFENMGA QMVKEVASKA SDDAGDGTTT ATVLAQAIVN EGLKSVAAGM NPMDLKRGID KAVNAAVAHI KSIAQPCEDG KSIAQVGTIS ANSDSHVGDI IAEAMAKVGK EGVITVEEGS GLENELDVVE GMQFDRGYLS PYFINNQESM SVEIEQPYIL LVDKKISNIR ELLPVLEAVA KSGKPLVIVA EDVEGEALAT LVVNNMRGIV KVTACKAPGF GDRRKAMLQD IAILTGGTVI SEEVGLDLES ATLEHLGSAK RVTMTKENST IVDGAGVAAD IESRVAQIRA QIEETSSDYD REKLQERVAK LAGGVAVIKV GAMTEVEMKE KKARVEDALH ATRAAVEEGV VPGGGTALIR AAAAIADLKG DNEDQNAGIG IAIRALEAPL RQIVSNAGGE ASVVADKVKN GEGNFGFNAA SGEYGDMLEF GILDPAKVSR TAIQAAGSIA GLMITTEAMI ADKPSEGGAA APDMGGMGGM GGMGGMM
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