| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0879 |
|---|
| Symbol | |
|---|
| ID | 3968813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1137764 |
|---|
| End bp | 1139350 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637919941 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526353 |
|---|
| Protein GI | 90020526 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.207268 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000254267 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATAATC GCACCTTCTC AGACACCCTA CTACTTTACG CAAACCGGCG TGTGGCCAGT
ATTTTTGTAC TAGGTATAGC CAGTGGATTA CCCTGGGTAA TCATTGGCTC GTCACTCACC
CTGTGGCTAA AAGAAGCGGG CATCAGCCGG TCTGAAATAG GCTTTGCAGG GCTTATTTTT
ACCGCCTATG CGGCAAACTT TTTATGGTCA CCGCTTGTTG ATCAATTAAA AATACCCGCG
CTACAAAAGC TTGGGCAGCG CAAAAGCTGG TTACTCGCCT GCCAGTTAGT GCTTGTTGGC
AGCTGTGTTT TAATGAGCCT ATGCGACCCC GCCAGCAATG CCAAACAACT GGTATTGTTT
GGTTTGATGG TCGCTATGGC TTCCGCGACA CAAGATATAG CCATAGACGC CTACCGCGTA
GATAGCTTTG CGCCACAAGA ACGTGAATAC ATATCTGCTG CAGCCGGCGC CGCCACCGCA
GGCTGGTGGA CAGGCTACGC GGGGTTGGGC TATATCCCGC TTATGCTGTC GGATTTAAAC
TGGAGCTGGC CTGAGCTATT TTTACTGCTG GCGGCAATGT GTGCGGCGGT ATGCGCAATT
GCCATGTTCG GCCCCAAGCC CCAATACTCT GGCAACGCCA ATCAGCAGGA ACTCTATAGC
GGCTACTTAA AAAAAGTGAG CCACTGTAAC CAGAGCAATA AGCTGCAACT AACCGCCTAT
TTACTACTGC CCTTCCTTGC CATAGCTTGG ACAGTGGCTG GTAGCCCAGG CCTGCCAGCC
TCTATTACGG ACTCCCCCCG TTACATTTGG CTATCCGTAT GCGTAATTGT CACCCTAATT
ACTACTGCAG GCATTAAAGT GGCGGCGCTG GATAAGGGGG CAACCCAGCA ACTTCAACCT
AGTGCGCTAG ACAAGCCCTT AGCCTGGCTA TTGCTCTCTT TAGCTGCACC TCTGCGAGAC
TTCGTGATGC GCAACGGGCT GCAAGTAGCC TGCGCTATTT TTAGTTTTAT TCTGCTGTTT
AAGGTTGGTG AGGCGTTTCT AGGGCGCATG TCGATTGTGT TTTATAAAGA GGTCGGCTTT
AGTAACACCG ATATAGCCAA CTACTCGAAG ATGCTAACGT GGATTGTCAC AATAGTATGC
TCACTAGCTG GCGGTATAGT GAATGCTCAC TTCGGGCTTA TTCGGGGGCT GGTGGTAAGC
GGCTGCGCAA TGGCGCTTAC CAACCTTATG TTTGCTTGGA TAGCACTCGC AGGCCCGGAG
ATTCCGCTGT ATGTAGCCAC GATTATCTTA GATGGGTTTG CACAGGCCTG GTCTACCGTC
GCCTTTGCCA GTTTTATAGC CCTGCTGTGT AACCACAACT TCTCAGCAAC TCAGTATGCA
CTTTTGGTAT CGATAGGTAA TTTAGGACGC ACCACACTGT CATCTTTTAG TGGGCAAGCT
GTAGATTGGT TAAACGGCAA CTGGCCGCTA TTTTTTGTGC TAACTACGCT AATGGTAATT
CCAAGCTTGC TTATTCTGCG CTGGTTAAGT CGCAACCTGC CAGATGTTGG CCAGCATGGC
AGCCGCGCAA GCAACAAAGG GACATAA
|
|---|
| Protein sequence | MHNRTFSDTL LLYANRRVAS IFVLGIASGL PWVIIGSSLT LWLKEAGISR SEIGFAGLIF
TAYAANFLWS PLVDQLKIPA LQKLGQRKSW LLACQLVLVG SCVLMSLCDP ASNAKQLVLF
GLMVAMASAT QDIAIDAYRV DSFAPQEREY ISAAAGAATA GWWTGYAGLG YIPLMLSDLN
WSWPELFLLL AAMCAAVCAI AMFGPKPQYS GNANQQELYS GYLKKVSHCN QSNKLQLTAY
LLLPFLAIAW TVAGSPGLPA SITDSPRYIW LSVCVIVTLI TTAGIKVAAL DKGATQQLQP
SALDKPLAWL LLSLAAPLRD FVMRNGLQVA CAIFSFILLF KVGEAFLGRM SIVFYKEVGF
SNTDIANYSK MLTWIVTIVC SLAGGIVNAH FGLIRGLVVS GCAMALTNLM FAWIALAGPE
IPLYVATIIL DGFAQAWSTV AFASFIALLC NHNFSATQYA LLVSIGNLGR TTLSSFSGQA
VDWLNGNWPL FFVLTTLMVI PSLLILRWLS RNLPDVGQHG SRASNKGT
|
|---|
| |