| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0862 |
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| Symbol | |
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| ID | 3965211 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1117788 |
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| End bp | 1119005 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637919924 |
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| Product | type IV pilus biogenesis protein PilC |
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| Protein accession | YP_526336 |
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| Protein GI | 90020509 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAGG CAACAACAAC CGAAGTTTTT GTTTACAAGG GTGTCGACAA AAAAGGCCAA
AAGGTAGAAG GGTCTGTAAC CAGCATTAGC TCAGCAATGG CTAAAGCCCA GCTTATAAAA
CAAGGAGTGA GAGCAAAGAG CATCCGTAAA AAGCCTAAAC CTATGTTTGG TGGTGGCAAC
AAACCCATTA AACCAATGGA TATTGCCCTA TTTACTCGGC AAATGGCTAC AATGATGAAA
GCTGGTGTGC CATTAGTACA GAGCTTTGAA ATAGTATCAA ATGGCTCGGA GAATAAATCG
CTAGCCGAGC TTATTCGTCA AATTAAAGAC GACGTCGCAT CGGGCTCTGG CTTCGCCCCA
TCGCTTAGAA AACACCCAAA ATATTTCGAC GAGCTTTTTT GTAATTTAGT AGAATCTGGC
GAGCAATCCG GCGCTCTAGA AACCATGCTA GACAGGATTG CCACCTACAA AGAAAAAACA
GAGCAGCTAA AAGCCAAAAT TAAAAAGGCT CTTACTTATC CTATCGCAGT ACTTGTGGTT
GCCGGCATTG TCTCCATGAT TCTTTTGATC AAAGTGGTGC CGCAGTTCGC TGCGAGCTTC
AGCTCATTCG GTGCGGAATT ACCAGCCTTT ACAATGATGG TTCTTGGCAT GTCTGACGCT
GCCCAGGAAT ACTGGCTACA AATAATTGTC ATCGTGGTCG CAGCCGTAGT TTGCTTTAAA
AAAGCCCGAG AGAAAAGCAA AGCCTTCTCT GATGGAGTCG ACAGAGTGAT GCTTAAAGCC
CCCATAGTAG GCATCATTAT CAACCAATCC GTTATGGCTA GGTTTGGCCG AACACTCTCA
ACCACATTTG CCGCCGGCGT CCCCCTAATC GATGCACTTC AATCTGTAGC AGGCGCAACA
GGGAATTCGG TCTACACTGT CGCTGTAGAA AAAGTGAGGG ACGAAGTATC CACTGGTACA
CCACTAAATG TTGCCCTAAC AAACACAGGT AAGTTTCCGG CACTACTCAT ACAAATGACG
GCTATCGGCG AAGAGTCGGG CGCGCTCGAT ACAATGCTAG ACAAGGTCGC CAGCTACTAT
GAAGAAGCGG TAGACAACTC TGTCGATAAC CTTACAGCGT TATTAGAGCC TTTAATTATG
TCTGTATTAG GAATACTTGT TGGCGGCATG ATGATCGCGA TGTACCTGCC TATCTTCATG
ATGGGGCAGG CAATTTAA
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| Protein sequence | MAKATTTEVF VYKGVDKKGQ KVEGSVTSIS SAMAKAQLIK QGVRAKSIRK KPKPMFGGGN
KPIKPMDIAL FTRQMATMMK AGVPLVQSFE IVSNGSENKS LAELIRQIKD DVASGSGFAP
SLRKHPKYFD ELFCNLVESG EQSGALETML DRIATYKEKT EQLKAKIKKA LTYPIAVLVV
AGIVSMILLI KVVPQFAASF SSFGAELPAF TMMVLGMSDA AQEYWLQIIV IVVAAVVCFK
KAREKSKAFS DGVDRVMLKA PIVGIIINQS VMARFGRTLS TTFAAGVPLI DALQSVAGAT
GNSVYTVAVE KVRDEVSTGT PLNVALTNTG KFPALLIQMT AIGEESGALD TMLDKVASYY
EEAVDNSVDN LTALLEPLIM SVLGILVGGM MIAMYLPIFM MGQAI
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