| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0844 |
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| Symbol | |
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| ID | 3965801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1096411 |
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| End bp | 1097787 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637919906 |
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| Product | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase |
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| Protein accession | YP_526318 |
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| Protein GI | 90020491 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTAT CTTTACAGGC ATTGGCAGAA AGATTTGGCG GCGAAATTGT ATACCCTGGA
GAGGCATACA ATATTACATT CTCGTCCATC AATACTGACA CCCGAGCGAT AAATCACGGC
GACGTGTTTA TTGCGTTGAA GGGACCGAAT TTTGATGGGC ACAATTATTT GGATGTAGCC
ACCCGAAAGG GGGCCGCAGC AGCCATAGTA GAAACGCCGA ACACCAATTT AGATTTACCG
CAATGGTGTG TGGGTGATAG CTACAAAGCG CTTGGCGAAC TAGGCCTAGC GAGTAGAGAA
AAATTTAATG GCAAGGTGAT TGGTGTAACC GGCAGCTGCG GTAAAACCAC TGTGAAGGGC
ATGCTGGCAG CGATTTGTTC CTTGGCTGGT TCAACCGTGG CCACCAGAGG AAATTTGAAC
AACCACATTG GCGTGCCGCT ATCGTTGATG CGCCTGGCCA ATGAGCACCA GTTCGCAGTC
ATTGAGGCGG GCACAAGCGG GCCAAATGAA ATTAAGTATT TGGCCGAACT TATTCAGCCT
CATGTGGCCA TTGTAAATAA CATCATGCCT GTGCATGTAG AGGGCTTTGG CTCGGTTGAA
GCAATAGCTA TAGATAAAGC ACACCTCTAT CGCGGCCTAG TTGAAGGTGG TGTAGGTGTG
CTTAACGTTG CTAGTGCTCA GCAGCCTACT TTATTAGATG CTTTGCAGGG CAAAAAAATA
ACTCGATTTA ATCCCGAGTT AACAGATGAA GCCGCCGAAG TGCGTGTCCA GAACATTGAG
CAAGACACTT TTGGCCGCGC AGAGTTTAGC GCGATTATTG AAGGTGAAGA GGTTGAGTTA
AAGCTTGGCG TGCTCGGTGC CCACAACGTA GCTAACGCTT TGGCTGCAGC AAGTGCGGCG
CGCGCGGTTG GCATAAGCGT TGAGCTAATT AAGCGTGGGC TAGAAAAATA CACCGGCGAT
AAGGGTCGTA TGCAGCTTGC GCGTGTAAAT GAAAAGCTAA CGGTAATAGA CGATACCTAT
AACGCCAGCC CGGGCTCAGT AAAAGCGGCC ATAGACTACG CTGCGCAATT TGAGCGCAGT
GCCATCGTCT TAGGCGATAT GGGAGAGCTG GGTGAAATGC GCAATTCGGC GCATGAAGAA
ATTGGGCGTT ACGCCCAACA AAAACAAATT AAACAATTGT GGTGTACCGG CGAAGCGAGT
CGGTTTACAG CACAAGGTTA CGGTCCGCAC GCTAAATGGT TTGAAGATAA AGAGCAGCTA
AAGCAAGCGC TGCCAATGCT CTGTTCGTCC GAAGTGGTGG TTTTAGTAAA AGGTTCGCGC
AGTACGCGAA TGGAACAGAT AGTTAATGCT CTATTAGCGA GCGGAGAACA AAAATAA
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| Protein sequence | MELSLQALAE RFGGEIVYPG EAYNITFSSI NTDTRAINHG DVFIALKGPN FDGHNYLDVA
TRKGAAAAIV ETPNTNLDLP QWCVGDSYKA LGELGLASRE KFNGKVIGVT GSCGKTTVKG
MLAAICSLAG STVATRGNLN NHIGVPLSLM RLANEHQFAV IEAGTSGPNE IKYLAELIQP
HVAIVNNIMP VHVEGFGSVE AIAIDKAHLY RGLVEGGVGV LNVASAQQPT LLDALQGKKI
TRFNPELTDE AAEVRVQNIE QDTFGRAEFS AIIEGEEVEL KLGVLGAHNV ANALAAASAA
RAVGISVELI KRGLEKYTGD KGRMQLARVN EKLTVIDDTY NASPGSVKAA IDYAAQFERS
AIVLGDMGEL GEMRNSAHEE IGRYAQQKQI KQLWCTGEAS RFTAQGYGPH AKWFEDKEQL
KQALPMLCSS EVVVLVKGSR STRMEQIVNA LLASGEQK
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