Gene Sde_0825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0825 
Symbol 
ID3967723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1075024 
End bp1077357 
Gene Length2334 bp 
Protein Length777 aa 
Translation table11 
GC content49% 
IMG OID637919887 
ProductMutator MutT 
Protein accessionYP_526299 
Protein GI90020472 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02071] penicillin-binding protein 1B 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00304949 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCCCGTA AAACCTCGCC CCGTAAGGCC CAACCTCGTA AAACCCACCG CCGTCCGCTT 
TGGCGTCGCT TATTGCGCAT TGTCTTTTTG CTTGGTGTGG GTTTCTCTAT ACCTTTTAGT
ATTTACTTGG TTTATCTCGA TCGCATTGTG GTGCAACAAT TTGAGGGCAA GCGCTTTGCT
TTGCCTGCCA AGGTGTATGC TCGGCCGTTA GAGTTGTATG TGGGGCAAAA AATAAATGCC
GATGTGCTGC AGGCAGAATT AAAAGAGTTA GGCTACAAAC CGGTAGAAAA TGTAGTTTTA
GCGGGGCAGT TTAGCCGCAC GCGCGATCAG TTTGATATAT ACATACGCCC TTTTACCTTT
TGGGATGGCG AGCAGCAAGC AAGTCATATA CAGCTCACCC TTAATAATGG GCAAGTGCGC
AGTTTAAAAA ATAAAAGCGA GCTAGCACCG CTTAACCTTG TGCGTTTAGA CCCAATAACC
ATCGGCGGTA TTTACCCCAA TCACGGTGAA GATAGAGAAC TTGTACGCCT GCACCAAGTG
CCACAAGTGC TTATTGATGC GCTAATAGCC GTGGAAGACA GACGCTATTA TCAGCATCAC
GGGGTGGACC CCAAAGCCAT ATTGCGCGCT GCAACCACGT TAATTACCAG TGAGCGCGTG
CAGGGCGGCA GCACCATTAC CCAGCAGCTA ATCAAAAACT TTTTCTTAAC ACGCGAGCGC
ACCATAGAGC GCAAAGTAAA AGAAATGCTT ATGGCAATCT TGCTAGAGCT GCATTTTAGT
AAAGACGATA TTTTAGAAAC CTATCTCAAC GAAGTGTACT TTGGGCAAGA TCGCAACCGC
GCTATTCACG GCTTTGGTTT GGCGAGCCAG TTTTATTTCT CGCGCCCTAT TGAACATTTA
GAACCTCATC AAGCAGCGCT GTTGGTGGGA ATGCTAAAAG GGCCAGCCTA TTACAACCCG
CGCCAGCACC CTAAGCGCGC AACTGAGCGC CGCAACTTGG TGTTAAATGC GCTGGCCGAT
CAAAATTACA TTAGCGATAG CACCTACAGG CAACAAGTTT TGCAGCCCTT AGTCATAAGT
GAATTGCCGG GCTTGGGGCA ATCGCGTCAC CCCGCATTTA TGCAATTGGT GGTGCGTCAG
TTAAAACGCG ATTACCGCGA AACCGATTTG CAATCTGAAG GCTTGCGCAT TTTCACTACG
CTCGACCCTT ACGAGCAAAA AGTCGCCGAG CAACAATTAA CGAAGAATTT GCAGCAGCTA
GAAAAAGCGC GCAGCTTGCC GCATAGCCAT TTGCAGGGCG CGGTGATAAT AGCCAACGTG
CACGACGGCG AAGTAAAAGC CGTTGTGGGC GGTCGCGATA GTCATTACCA AGGTTTTAAT
CGCGCGTTAG ATGCGTCCCG TCAAATTGGC TCGCTTATAA AGCCCGCCAT TTATTTAACC
GCACTGGCAG ATATTGAACA CTACAACTTG GCAACGCCAT TAGATGACAG CCCCTTCGAG
TGGAGTGAGC CGGGCATAGA ACCTTGGCGC CCGCAAAACT ACGATCACGA GTTTCACGGT
ACGGTGCCGC TCTGGTTGGC ACTGGCTAAA TCGTACAATG TGTCGGCGGC GCGTTTGGGT
ACGCAAATAG GTGTAGATAA CGTTATGCGC ACCGTGGCCA ACCTTGGGGT AGAAAAGTCA
CTGCCTACCT ATGCTTCTAG TTTGCTGGGT ACCGTGCACC TTACGCCTTA CGAAATAACA
CAGATGTACC ACACCATAGC GAGTGGGGGC TTTAAAACTC CGTTTCGCGC AATTCGCGAG
GTAACCACAG TAAATGGTGC GCCGCTTAAT CGTTACAACC TTAGCGTAGA GCAAGTGGTA
ACCCCCACCG CCAACCACTT AATTGTGGCA GGTTTACAGC AGGTGGTTGC GCGCGGTACC
GGCACCGGCG TGCTGAATTA TATTGCTGAT GATATACACG CAGCCGGCAA AACCGGTACA
ACGGATGACT TGCGCGATAG TTGGTTTGCG GGTTTTACCG GTAATCGCGT AGCGGTGGTG
TGGGTTGGTA ACGATAAAAA CGAGCCGATA AAACTTACCG GTGCCAGCGG CGCACTAAGA
ATTTGGGGCG ACATTATGAA AAATTTGTCG CTCGAACCCC TTAACGCTGC GGCACCAGAA
AATGTAGACT ACGTGCCCAT CAGTCATCGC GACGGGTTTG TTGCGCGCGA TAACTGCAAT
AATACTTTTA CTTTGCCTTT TCACACTAAA TCGCTGCCCG ATGCCGACTA CTGCGGTGCT
AAAACTGGGC GCAAGGTAAA GTCTTGGTTT AACAAATTAT TTGGAAAAGA TTAA
 
Protein sequence
MPRKTSPRKA QPRKTHRRPL WRRLLRIVFL LGVGFSIPFS IYLVYLDRIV VQQFEGKRFA 
LPAKVYARPL ELYVGQKINA DVLQAELKEL GYKPVENVVL AGQFSRTRDQ FDIYIRPFTF
WDGEQQASHI QLTLNNGQVR SLKNKSELAP LNLVRLDPIT IGGIYPNHGE DRELVRLHQV
PQVLIDALIA VEDRRYYQHH GVDPKAILRA ATTLITSERV QGGSTITQQL IKNFFLTRER
TIERKVKEML MAILLELHFS KDDILETYLN EVYFGQDRNR AIHGFGLASQ FYFSRPIEHL
EPHQAALLVG MLKGPAYYNP RQHPKRATER RNLVLNALAD QNYISDSTYR QQVLQPLVIS
ELPGLGQSRH PAFMQLVVRQ LKRDYRETDL QSEGLRIFTT LDPYEQKVAE QQLTKNLQQL
EKARSLPHSH LQGAVIIANV HDGEVKAVVG GRDSHYQGFN RALDASRQIG SLIKPAIYLT
ALADIEHYNL ATPLDDSPFE WSEPGIEPWR PQNYDHEFHG TVPLWLALAK SYNVSAARLG
TQIGVDNVMR TVANLGVEKS LPTYASSLLG TVHLTPYEIT QMYHTIASGG FKTPFRAIRE
VTTVNGAPLN RYNLSVEQVV TPTANHLIVA GLQQVVARGT GTGVLNYIAD DIHAAGKTGT
TDDLRDSWFA GFTGNRVAVV WVGNDKNEPI KLTGASGALR IWGDIMKNLS LEPLNAAAPE
NVDYVPISHR DGFVARDNCN NTFTLPFHTK SLPDADYCGA KTGRKVKSWF NKLFGKD