Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0825 |
Symbol | |
ID | 3967723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1075024 |
End bp | 1077357 |
Gene Length | 2334 bp |
Protein Length | 777 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637919887 |
Product | Mutator MutT |
Protein accession | YP_526299 |
Protein GI | 90020472 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00304949 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCCCGTA AAACCTCGCC CCGTAAGGCC CAACCTCGTA AAACCCACCG CCGTCCGCTT TGGCGTCGCT TATTGCGCAT TGTCTTTTTG CTTGGTGTGG GTTTCTCTAT ACCTTTTAGT ATTTACTTGG TTTATCTCGA TCGCATTGTG GTGCAACAAT TTGAGGGCAA GCGCTTTGCT TTGCCTGCCA AGGTGTATGC TCGGCCGTTA GAGTTGTATG TGGGGCAAAA AATAAATGCC GATGTGCTGC AGGCAGAATT AAAAGAGTTA GGCTACAAAC CGGTAGAAAA TGTAGTTTTA GCGGGGCAGT TTAGCCGCAC GCGCGATCAG TTTGATATAT ACATACGCCC TTTTACCTTT TGGGATGGCG AGCAGCAAGC AAGTCATATA CAGCTCACCC TTAATAATGG GCAAGTGCGC AGTTTAAAAA ATAAAAGCGA GCTAGCACCG CTTAACCTTG TGCGTTTAGA CCCAATAACC ATCGGCGGTA TTTACCCCAA TCACGGTGAA GATAGAGAAC TTGTACGCCT GCACCAAGTG CCACAAGTGC TTATTGATGC GCTAATAGCC GTGGAAGACA GACGCTATTA TCAGCATCAC GGGGTGGACC CCAAAGCCAT ATTGCGCGCT GCAACCACGT TAATTACCAG TGAGCGCGTG CAGGGCGGCA GCACCATTAC CCAGCAGCTA ATCAAAAACT TTTTCTTAAC ACGCGAGCGC ACCATAGAGC GCAAAGTAAA AGAAATGCTT ATGGCAATCT TGCTAGAGCT GCATTTTAGT AAAGACGATA TTTTAGAAAC CTATCTCAAC GAAGTGTACT TTGGGCAAGA TCGCAACCGC GCTATTCACG GCTTTGGTTT GGCGAGCCAG TTTTATTTCT CGCGCCCTAT TGAACATTTA GAACCTCATC AAGCAGCGCT GTTGGTGGGA ATGCTAAAAG GGCCAGCCTA TTACAACCCG CGCCAGCACC CTAAGCGCGC AACTGAGCGC CGCAACTTGG TGTTAAATGC GCTGGCCGAT CAAAATTACA TTAGCGATAG CACCTACAGG CAACAAGTTT TGCAGCCCTT AGTCATAAGT GAATTGCCGG GCTTGGGGCA ATCGCGTCAC CCCGCATTTA TGCAATTGGT GGTGCGTCAG TTAAAACGCG ATTACCGCGA AACCGATTTG CAATCTGAAG GCTTGCGCAT TTTCACTACG CTCGACCCTT ACGAGCAAAA AGTCGCCGAG CAACAATTAA CGAAGAATTT GCAGCAGCTA GAAAAAGCGC GCAGCTTGCC GCATAGCCAT TTGCAGGGCG CGGTGATAAT AGCCAACGTG CACGACGGCG AAGTAAAAGC CGTTGTGGGC GGTCGCGATA GTCATTACCA AGGTTTTAAT CGCGCGTTAG ATGCGTCCCG TCAAATTGGC TCGCTTATAA AGCCCGCCAT TTATTTAACC GCACTGGCAG ATATTGAACA CTACAACTTG GCAACGCCAT TAGATGACAG CCCCTTCGAG TGGAGTGAGC CGGGCATAGA ACCTTGGCGC CCGCAAAACT ACGATCACGA GTTTCACGGT ACGGTGCCGC TCTGGTTGGC ACTGGCTAAA TCGTACAATG TGTCGGCGGC GCGTTTGGGT ACGCAAATAG GTGTAGATAA CGTTATGCGC ACCGTGGCCA ACCTTGGGGT AGAAAAGTCA CTGCCTACCT ATGCTTCTAG TTTGCTGGGT ACCGTGCACC TTACGCCTTA CGAAATAACA CAGATGTACC ACACCATAGC GAGTGGGGGC TTTAAAACTC CGTTTCGCGC AATTCGCGAG GTAACCACAG TAAATGGTGC GCCGCTTAAT CGTTACAACC TTAGCGTAGA GCAAGTGGTA ACCCCCACCG CCAACCACTT AATTGTGGCA GGTTTACAGC AGGTGGTTGC GCGCGGTACC GGCACCGGCG TGCTGAATTA TATTGCTGAT GATATACACG CAGCCGGCAA AACCGGTACA ACGGATGACT TGCGCGATAG TTGGTTTGCG GGTTTTACCG GTAATCGCGT AGCGGTGGTG TGGGTTGGTA ACGATAAAAA CGAGCCGATA AAACTTACCG GTGCCAGCGG CGCACTAAGA ATTTGGGGCG ACATTATGAA AAATTTGTCG CTCGAACCCC TTAACGCTGC GGCACCAGAA AATGTAGACT ACGTGCCCAT CAGTCATCGC GACGGGTTTG TTGCGCGCGA TAACTGCAAT AATACTTTTA CTTTGCCTTT TCACACTAAA TCGCTGCCCG ATGCCGACTA CTGCGGTGCT AAAACTGGGC GCAAGGTAAA GTCTTGGTTT AACAAATTAT TTGGAAAAGA TTAA
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Protein sequence | MPRKTSPRKA QPRKTHRRPL WRRLLRIVFL LGVGFSIPFS IYLVYLDRIV VQQFEGKRFA LPAKVYARPL ELYVGQKINA DVLQAELKEL GYKPVENVVL AGQFSRTRDQ FDIYIRPFTF WDGEQQASHI QLTLNNGQVR SLKNKSELAP LNLVRLDPIT IGGIYPNHGE DRELVRLHQV PQVLIDALIA VEDRRYYQHH GVDPKAILRA ATTLITSERV QGGSTITQQL IKNFFLTRER TIERKVKEML MAILLELHFS KDDILETYLN EVYFGQDRNR AIHGFGLASQ FYFSRPIEHL EPHQAALLVG MLKGPAYYNP RQHPKRATER RNLVLNALAD QNYISDSTYR QQVLQPLVIS ELPGLGQSRH PAFMQLVVRQ LKRDYRETDL QSEGLRIFTT LDPYEQKVAE QQLTKNLQQL EKARSLPHSH LQGAVIIANV HDGEVKAVVG GRDSHYQGFN RALDASRQIG SLIKPAIYLT ALADIEHYNL ATPLDDSPFE WSEPGIEPWR PQNYDHEFHG TVPLWLALAK SYNVSAARLG TQIGVDNVMR TVANLGVEKS LPTYASSLLG TVHLTPYEIT QMYHTIASGG FKTPFRAIRE VTTVNGAPLN RYNLSVEQVV TPTANHLIVA GLQQVVARGT GTGVLNYIAD DIHAAGKTGT TDDLRDSWFA GFTGNRVAVV WVGNDKNEPI KLTGASGALR IWGDIMKNLS LEPLNAAAPE NVDYVPISHR DGFVARDNCN NTFTLPFHTK SLPDADYCGA KTGRKVKSWF NKLFGKD
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