| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0816 |
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| Symbol | |
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| ID | 3967714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1062863 |
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| End bp | 1064791 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637919878 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_526290 |
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| Protein GI | 90020463 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0124446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTCTTC TGCGTCGGCT AGTTCTAGCC ATTACTGTAA TGATTATTGC CCTGCTGGCT
GCCAATGTGG TGGTGGGGGT GTACAACGCT CGCAGCTATT TCTCTCACCA GTTACAGGCT
TTGGCAGAAG ATACCGCCAC CTCGCTTGGT TTAACTATTT CCCATGCCGC AAAAGATAAA
GATCTCGCTC AAGTAGAGCT GATGATTAAC GTAATTTTTG ATCGCGGCTA CTACCAATCT
ATTACCTACA GCGATATGCA AGGCAAGGTT GTGGTGTCGC GCTCGCGTGA AATTCGCATT
GAAGGTGTGC CACAGTGGTT TATAGACTGG ATTGTGATTC CGCAGCGCGC GGGCACCGCC
GAGGTGGTGT CGGGCTGGTT TAGGTTGGGG GAGCTGCGCG TGCAAACGCA CCCCGGCTAC
GCCTACCGCG ATTTGTGGCG GGTGTTTACC GAGCAGTTGT GGTTGTTCTT TTTTACCGCC
GTGCTGTGTT ATGGCTTGGC CGGCTTGGGG TTAAAGTATT TACTGCGCCC GTTAAAGCGG
TTGGAAGATC AGGCCGACGC TATTTGCCGC AAGGAATTCC CTGTGCAGGA AACGTTGCCC
AATACGCCGG AGTTGCGCCG AATGGTTGTG GCCATGAATC GCATGGTGAG CAAAATAAAA
GATATGTTTC AGCAGCAGGT AAACCTTACC GAAGAGCTGC GCCGAGAGGC GTCTATTGAT
GCGCTTACCG GCTTGCCAAA TAGGGATGAA TTTAACGCTC AGCTAAAGGC GTGGTTGGAA
TCGGACCACG GTGGCGGTAT GGCTGCATTG GTAATAGTGC ACGTGGCGGA CTTGCAAAGC
TTGAACGACA CGCATGGCCG CGAAAAAAGC GATGGTTGGT TGCAGCAAAT AGCAAAAGTC
ATAGAGCATT GCTCGTCTGC TTGGCCCAGC AGTATTTTGG CGCGCCGCAC CGGCTGCGAT
TTTTGCTGGT TTGTACCCAG CGTAGCCGAG CGAGAGTTAA ACGCACTCGC AACCGATTTA
GTTACCCGCA TTAAATTGCT GGAGTTTGCC GAAGTTGGCA AATTTAATGT GGGTATAGCC
GTGAGCGCGC AAGTGGATTC GTTACCTGCA TTGCTGGGCA CCGCAGATGC GGCATTGCGC
CAAAGTACCA GTTTGGGCGA CGGTGAATGG GTGGTTATGC CGCTGGGCAA TAAAACGATT
CAGCGCGCAG CCGGTGACTG GCGCCCCTTC TTAGAAAACG TAATAAATAA CCAATTGCTT
TCACTGCACG CCCAGCCCAT TGTGGCTCGC AGTGGAGAAA GCCCGATTTA CGCAGAAGTG
TTATCGCGCA TTCAAGATGG CGATGATCTA ATCAATGCGG GTGTTTTCTG GCCGCTTGTA
GAGCGATTTA AATTAGAAGC TGCAATGGAT CGCTCGGTAC TGCTTGCGCT TACTCAGCAC
TTAGCGCAAT CTGATCCTCA GTCGCGGCGC TGTTTTGGTG TGAATTTGTC GCCCATGTCG
CTTTTCAACC TTGAGTTTAC CGAGTGGTTG GAACGAGAAA TACTGGCGTC ACCTTGTGCA
TCAAGACTAG TTATAGAAAT ACCCGAGCGC GCACTTAAGC GCACTGGTGG CTTGCCCGAA
ATTGTATTCA AACTGGCCGC TGGGGGTGTG CGCATTGCAC TGGATAGGTT CGGCTTAATG
CCTGCGGCGT TGGGTAGTTT GCAGAATTTG CCGTTAACTT ATGTAAAAAT AGATCGGCGT
TTTATTTCCG GTATTGATAG CCACAAGCAA AATCAGTTTT ATGTACGCAA TCTGGTACAA
ATTGCACAAA GTTGTGATAT TGAAGTGATT GCCGAAGGGG TGGAAACCTC CGCGGAATGG
CGCGTACTTG GGGAACTTGG CGTTGGAGTG GGGCAGGGTT ACCTGTTTGC CGAGCCTACA
AAAATTTAG
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| Protein sequence | MSLLRRLVLA ITVMIIALLA ANVVVGVYNA RSYFSHQLQA LAEDTATSLG LTISHAAKDK
DLAQVELMIN VIFDRGYYQS ITYSDMQGKV VVSRSREIRI EGVPQWFIDW IVIPQRAGTA
EVVSGWFRLG ELRVQTHPGY AYRDLWRVFT EQLWLFFFTA VLCYGLAGLG LKYLLRPLKR
LEDQADAICR KEFPVQETLP NTPELRRMVV AMNRMVSKIK DMFQQQVNLT EELRREASID
ALTGLPNRDE FNAQLKAWLE SDHGGGMAAL VIVHVADLQS LNDTHGREKS DGWLQQIAKV
IEHCSSAWPS SILARRTGCD FCWFVPSVAE RELNALATDL VTRIKLLEFA EVGKFNVGIA
VSAQVDSLPA LLGTADAALR QSTSLGDGEW VVMPLGNKTI QRAAGDWRPF LENVINNQLL
SLHAQPIVAR SGESPIYAEV LSRIQDGDDL INAGVFWPLV ERFKLEAAMD RSVLLALTQH
LAQSDPQSRR CFGVNLSPMS LFNLEFTEWL EREILASPCA SRLVIEIPER ALKRTGGLPE
IVFKLAAGGV RIALDRFGLM PAALGSLQNL PLTYVKIDRR FISGIDSHKQ NQFYVRNLVQ
IAQSCDIEVI AEGVETSAEW RVLGELGVGV GQGYLFAEPT KI
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