Gene Sde_0811 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0811 
Symbol 
ID3967709 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1057411 
End bp1058751 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content50% 
IMG OID637919873 
ProductUDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase 
Protein accessionYP_526285 
Protein GI90020458 
COG category[I] Lipid transport and metabolism 
COG ID[COG0439] Biotin carboxylase 
TIGRFAM ID[TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGATA AAGTCCTTAT CGCAAACCGC GGCGAAATTG CGCTGCGTAT TCTGCGTGCA 
TGTAAGGAGC TGGATATAAA AACCGTGGCG GTATACTCCA AAGCCGACCG CGACCTGAAG
CACGTGCGCC TTGCCGATGA ATCTGTATGC ATTGGCCCAC ACCCTTCTAC CGCCAGCTAC
TTAAACATCC CCGCTATTAT TGCGGCCATG GAAATCACCG ATTCTGTTGC CGTGCACCCA
GGCTATGGTT TTCTAGCTGA AAACGCCGAC TTTGCAGAGC AAGTGCAAAA AAGTGGTTTT
ACGTTTATAG GGCCAGACCC AGACGTAATT CGCATGATGG GCGACAAAGT GTGCGCAATT
GAAGCCATGA AAAAAGCAGG CGTACCAACT GTACCCGGCT CTGGGGGCGC CCTGCCCGAC
GACCGCGAAG AATGCATTCG CATTGGCAAC CGCATTGGCT TCCCTGTAAT TATTAAAGCT
GCTGCCGGTG GCGGTGGTCG CGGTATGCGT GTTGTACACA CCGAATCCGC ACTTTGGAAC
TCCATCCAGC TAACCAAAGC AGAAGCGGGC GCAGCCTTTG GCGACGACAC CGTATACATG
GAGAAATACC TGCAAAACCC ACGTCACGTG GAAGTTCAGG TAATGTCCGA TGGCCAAGGC
AACGCCGTGC ACTTTTTTGA CCGCGACTGC TCACTGCAAC GTCGCCACCA AAAAGTATTG
GAAGAAGCTC CAGCGCCTGG CATAGATATG GCCATCCGCG AAGAAGTTTA CGCAGCATGC
GTTAAAGCCT GTATCGAAAT TGGCTATCGC GGTGCCGGTA CATTTGAATT CCTTTACGAA
GACGGCAACT TCTATTTCAT TGAAATGAAC ACCCGTATTC AGGTTGAACA CCCTGTAACA
GAAATGATTA CTGGTTTCGA CCTTATTAAA GAGCAAATTC GCGTGTGCGC AGGCCACAAA
TTAAGCGTAA CCCAAGCGGA CATTAAGCTT AACGGTCACG CATTTGAGTG CCGCATTAAC
GCTGAAGACC CAAAAACCTT TATGCCTTGC CCAGGTAAAG TGGAAAAATT CCACGCGCCA
GGCGGCTTGG GTGTACGTGT AGATTCTCAC CTTTACGGTG GCTACAGCGT ACCGCCTTAC
TACGATTCAA TGATTGCCAA AATCATTACC CACGGCGAAA CCCGTGATAT TGCACTGCGT
CGTATGCGTG TTGCCTTAGA TGAGCTCGTG GTAGGTGGAA TTAAAACCAA CACAGACCTG
CAAAAAGACT TGGTCCGTGA CAGTGAGTTC GCCAAAGGCG GTGTAAACAT TCACTACTTA
GAGAAAAAGC TTGGGCTGTA A
 
Protein sequence
MFDKVLIANR GEIALRILRA CKELDIKTVA VYSKADRDLK HVRLADESVC IGPHPSTASY 
LNIPAIIAAM EITDSVAVHP GYGFLAENAD FAEQVQKSGF TFIGPDPDVI RMMGDKVCAI
EAMKKAGVPT VPGSGGALPD DREECIRIGN RIGFPVIIKA AAGGGGRGMR VVHTESALWN
SIQLTKAEAG AAFGDDTVYM EKYLQNPRHV EVQVMSDGQG NAVHFFDRDC SLQRRHQKVL
EEAPAPGIDM AIREEVYAAC VKACIEIGYR GAGTFEFLYE DGNFYFIEMN TRIQVEHPVT
EMITGFDLIK EQIRVCAGHK LSVTQADIKL NGHAFECRIN AEDPKTFMPC PGKVEKFHAP
GGLGVRVDSH LYGGYSVPPY YDSMIAKIIT HGETRDIALR RMRVALDELV VGGIKTNTDL
QKDLVRDSEF AKGGVNIHYL EKKLGL