Gene Sde_0791 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0791 
Symbol 
ID3966390 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1021703 
End bp1023526 
Gene Length1824 bp 
Protein Length607 aa 
Translation table11 
GC content48% 
IMG OID637919853 
ProductAlpha-L-arabinofuranosidase 
Protein accessionYP_526265 
Protein GI90020438 
COG category[R] General function prediction only 
COG ID[COG3940] Predicted beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.570389 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.122086 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAGA TAGAAGAAAT AATGAAACAC ACAGCGCGCA CTATAGCGCT AGGTGCAACA 
GGTGCCGCCT TGCTAACGGG GTTAATTGCC TGTAACGGTA CCAATGTGAA TACAAACGGG
GATACCCAAC AAGCAAGCAT TAAAAAAGCG CCAGAAGGCA TGTTTGCCAA CCCGTTGTTC
GCCAATGGCG CAGACCCTTG GTTAGAGTAT TACGATGGCA ATTACTACCT CACTACCACC
ACATGGACAT CGCAACTTGT TATGCGTAAA TCACCCACGT TGGATGGTTT GTCTACTGCG
CTGCCGGTGA ATGTATGGTC CGATTCAGAT TTAACCCGCT GCTGTAACTT TTGGGCGTTT
GAATTCCATC GCTTAAACGG CCCTAACGGC TGGCGTTGGT ATTTAATGTA CACCTCGGGC
CAGCACGGCA CTTTAGATCA CCAACACTTA AGCGTATTAG AAAGTGTGGG TGACGACCCT
ATGGGGCCAT ACACCTACAA AGGTGAAATG ATGCCCAATA CATGGAATAT AGACGGCAGT
TATTTAGAGC ATAATGGCCA ATTATATTTG TTGTGGTCTG AATGGGTAGG TGACGAGCAG
CAAAACTTTA TATCTAAAAT GACCACCCCA TGGAGCATTG AAGGCCCGCG AGCACTGTTA
ACTCGGCCGG AAGCAGAGTG GGAAAAAAGC GGTCGCAAAG TTAACGAAGG CCCAGAGATT
CTAAAAAAAG ATGGTCGTAC CTTTTTGATT TACTCGGCGA GCTATTGCGA TACGCCAGAT
TATAAACTGG CAATGAAAGA GCTAACGGGC GACGACCCAA TGAACTCCGA GCACTGGACT
AAATACGATA AGCCCGTGTT TGAAAGAGGG AACGGTGTGT TTGCCCCAGG CCACAATGGT
TTCTTCAAAT CGCCCGATGG CACAGAAGAT TGGATTGTGT ACCACGGAAA TTCGAAAGAA
GAGCACGGCT GCGGTGCAAC GCGCTCTGTG CGCGCACAGA AATTTACTTG GAACACAGAC
GGCACCCCAA ATTTTGGTGA GCCAATACCA GAAGGCCAAT TTTTGCCCTT ACCTTCTGGC
GAAAACGGTC CTTTAGTGAC TGCACTGCAA GGTGCACGTA TTCAGTTGCG CAATGGCGAA
AGCTGTTTAT TAGCCGAAGG TAAAGAGCTG AAGCAGGGCA GTTGCCAAGC AGAAGCCAGT
TTATGGGTAA TGGATAACAC GGCAGATAAT CACTACCGCT TTGGCAATGT AGCCAGCAAT
TTATTTTTAA CGGCAGACGA AGGCCTTAGT CAGAGTGCCT GGGTTAATAC TGCAAGCCAG
CGCTGGGCAC TTAATGCAGG CGAAGGTAAC TTTGTTGCGT TTACAAACAA GTACACCGGC
GATGCGCTTA TGCAAAATAA TTGGCAAATA CTACCGGTTG GCAAAGTGGC AATTAGCAGC
ATTCAAAGTG GCCGCGTATT ACAGGCGTGC GATAAAAACA GCGCGAATGT AAACCAAGGC
GGCTGGCAGG GTAGGGCTTG TCAAGCATGG CAATTTAACC CAGCAAGTGA AGGCCATGTG
CAAATTAAAA CGGGCAACCA ATGTTTAACC GTTGAGAATA AATCCATAGT GCCTGGCACC
AATGTTATTG CCGGCGAGTG TGAATCAACT AGCAGCCAAT GGCTTTATCA ATTAGATAAA
GAAGGCCGCG CAACCTTCAC AAACCGCGAA AGCAAACAGC GTTTAGATTT AGCAAACTGC
GGCCTAGCCG ACGGCACCAA CTTCGCACAA GCCCCTGCGT TAGATACTAT TTGCCAAGCA
TTCCAAGTGC GTTATTTACC GTAA
 
Protein sequence
MKKIEEIMKH TARTIALGAT GAALLTGLIA CNGTNVNTNG DTQQASIKKA PEGMFANPLF 
ANGADPWLEY YDGNYYLTTT TWTSQLVMRK SPTLDGLSTA LPVNVWSDSD LTRCCNFWAF
EFHRLNGPNG WRWYLMYTSG QHGTLDHQHL SVLESVGDDP MGPYTYKGEM MPNTWNIDGS
YLEHNGQLYL LWSEWVGDEQ QNFISKMTTP WSIEGPRALL TRPEAEWEKS GRKVNEGPEI
LKKDGRTFLI YSASYCDTPD YKLAMKELTG DDPMNSEHWT KYDKPVFERG NGVFAPGHNG
FFKSPDGTED WIVYHGNSKE EHGCGATRSV RAQKFTWNTD GTPNFGEPIP EGQFLPLPSG
ENGPLVTALQ GARIQLRNGE SCLLAEGKEL KQGSCQAEAS LWVMDNTADN HYRFGNVASN
LFLTADEGLS QSAWVNTASQ RWALNAGEGN FVAFTNKYTG DALMQNNWQI LPVGKVAISS
IQSGRVLQAC DKNSANVNQG GWQGRACQAW QFNPASEGHV QIKTGNQCLT VENKSIVPGT
NVIAGECEST SSQWLYQLDK EGRATFTNRE SKQRLDLANC GLADGTNFAQ APALDTICQA
FQVRYLP