Gene Sde_0786 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0786 
Symbol 
ID3965839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1014924 
End bp1015964 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content47% 
IMG OID637919848 
Productarabinan endo-1,5-alpha-L-arabinosidase 
Protein accessionYP_526260 
Protein GI90020433 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3507] Beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000141301 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.447167 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTAACA AAAACAAACG CCCAATTACA TTCGCTTTAG TCGTTAGCCT CTTAGCCCTG 
CTTGCCCTTG CAGGCTGCAG CGAGGCAAAA CAAGTAAGCA TCCACGACCC AGTAATGATT
AAAGAAGGTG ACACCTACTA CTTGTTTAGC ACTGGCCCCG GCATAACAAT GTATAGCTCT
AGCGATATGA AAAACTGGCG CCGCGAAGGC GAAGTATTTA ATCAAGCCCC TAGTTGGGCC
TCCAACGCCG TACCCTATTT TAAAGGCCAC CTGTGGGCAC CCGACATCAT TGAAAAAGAT
GGTCTGTTTT ACCTCTACTA TTCTGTGTCT GCTTTTGGAA AGAACACATC CGGCATTGGC
GTTACCGTAT CGCCCACGCT TAACCCACGC GCGCCCAATT ACGGTTGGCA AGATAAAGGC
ATGGTATTGC GCAGCGTGCC TGAGCGCGAC GAGTGGAACG CTATCGACCC CAATATTGTG
GTAGATAACA ACGGCACCGC ATGGATGGCT TTTGGCTCCT TTTGGCAAAG CTTAAAAATG
GTGGCACTAG ACAGCAGCTG GACAAAAATA GCTGAGCCTC AACAGTGGCA TACCATAGCA
GCCTTACCCA AAGGCAGTAT GCCCACAGGC GACGCAGTAA AGGACGGCGA AATAGAAGCT
CCTTTTATTT TTAAAAAGAA CGACGATTAC TTTTTGTTTG TAAGTTGGGG TAAATGCTGC
CGCAAAGATG AAAGCACCTA CCGCCTAGCA ATGGGCCGCA GCAAAAATAC TACCGGTCCA
TTCTTAGATA AAAACGGCAA AGACCTCGCC CAAGGTGGTG GCACCCTATT AATAAGTGGC
AACAAAAACT GGCCCGGCTT AGGCCACAAC AGCGCCTACA CCTTCGACGG CAAAGATTGG
CTTGTGCTAC ACGCCTATGA ATCTGCAGAT AACGGTTTAC AAAAACTAAA AATATTAGAA
ATAAACTGGG ATAAAGACGG CTGGCCAACT GTAGATACCA AAGAACTGGA TGAGTTTGTT
AGTATTGAAT TAACTCAATA A
 
Protein sequence
MLNKNKRPIT FALVVSLLAL LALAGCSEAK QVSIHDPVMI KEGDTYYLFS TGPGITMYSS 
SDMKNWRREG EVFNQAPSWA SNAVPYFKGH LWAPDIIEKD GLFYLYYSVS AFGKNTSGIG
VTVSPTLNPR APNYGWQDKG MVLRSVPERD EWNAIDPNIV VDNNGTAWMA FGSFWQSLKM
VALDSSWTKI AEPQQWHTIA ALPKGSMPTG DAVKDGEIEA PFIFKKNDDY FLFVSWGKCC
RKDESTYRLA MGRSKNTTGP FLDKNGKDLA QGGGTLLISG NKNWPGLGHN SAYTFDGKDW
LVLHAYESAD NGLQKLKILE INWDKDGWPT VDTKELDEFV SIELTQ