| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0780 |
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| Symbol | |
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| ID | 3965833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1009028 |
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| End bp | 1011043 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919842 |
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| Product | dehydroquinase, class II |
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| Protein accession | YP_526254 |
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| Protein GI | 90020427 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.396727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.216431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCACA GTAAAAAAAG TTTGCCGGCA TTAACACTTC TTTCGGCAGC CATAATGCTA
AGCGCGTGCA GCGGCGACGA CAACAAGAAG CCAGATGTCA TTGCCGAAGT AGATTTGCGG
TTAATGGAAA CCACGGATAT TCACGCCAAC GTAATGGATT ACAACTACTA CAGCGGCAGT
ACCAATATTG GTATTGGCTT GGTACGCACG GCAACCTTAA TTAAAGAGGC ACGCGTAGAG
CTTACCGAAA TGGGTAACTC TGTATTGGTT GATAACGGCG ATTTAATTCA AGGCAGCCCG
ATGGGCGACT GGAAGCAAGC TACGGGTATA GAAGCTGGTG AAGTTCATCC CGTTTACAAA
GCCATGAATG AATTAGATTA CGTAGTAGGT AACTACGGCA ACCACGAATT TAACTACGGC
TTAGAATTTT TGGCCGAAAG TGTAAACGAT GCAAACTTTC CTTACATTAG CGCCAACATT
TTTATAGACG ATGGCGACGA TAACCCAGAT AACGACATGT TGTACTTCGA CCCTTACCAC
CTAGAAACAA AGGCGGTAAT GGATAAAGAA GGTAACACCC ACGAAATTAC CATCGGTTTT
ATTGGCTTTT TACCACCACA AATTATGCAG TGGGATAAAG CCAACTTAAG TGGCAAAGTT
ATTACTAAAG ATATTAAAGC CATGGCTGAG CGTTTTGTAC CGCAAATGAA AGAAGAGGGA
GCCGATATTG TGGTTGCCAT TCCTCACTCT GGTATAAGCA CAAAAGCCTA CAGTGCCGAT
GCACTTGCCG AGCACAGCAG CTGGTATTTG GCCGATGTAG AAGGCATAGA TGCAATTATG
TTCGGCCACA GCCACTTAAC CTTTCCATCC TCTGCGTTTG CCGAAACTGA AGGGGTAGAT
TTAGAAGCGG GTACCATTAA AGGTGTGCCA GCGGTAATGC CGGGTTACTG GGGCAGCCAC
TTGGGTATTA TCGATTTAAG TTTAGAGTAC AACGTTACCC AAGATACATG GCAAGTCGTT
GGCAGCCAAG TAGAGGCGCG TGCAATAGTG GTTGATGGCG AAGCCACCGT TGAGCCAGAT
GCAGTTATTG CAGCGAATTT AGAGCACGAC CACCAAGCGA CCATTGCTTA TATGGGCACC
CCTATTGGTG AATCTACCGA CGATATATTT AGCTTTTTAG CATTGGTTAA AGATGATCCA
TCGATTCAAA TTGTAAGCGA TGCCCAAAAA GCCTACGTAG AAAACCTTAT TCAAGGCGAC
GTTAACTTGC AGGATTTACC TGTGCTTTCT GCCGCTGCAC CGTTTAAAGC CTGTAACCGC
GAAGGCATAT GTGCAGATGA AACAAGCTTT ACTACCGTAG CTAAGGGTGA GCTTACATTA
AGTAATGCTG CCGATTTGTA CCTATACCCC AACACTTTAG TGGCTGTAAA AATTAATGGC
GAAGAGTTAA AAGGTTGGTT GGAATGTTCT GCCTCGCAAT TCTTCCAAAT TGATACCACT
ACTACAGCCC AACAAGAGCT TGTTGATTAT GCGGGTTTCC CTACCTATAA CTTTGATGTT
ATGGATGGCG TAACCTACCA AATTGACGTA ACACAACCAC CGCGCACAGA CCGTAGTTGC
AGTGTTATTC ATGCCGATGC AAATCGCATT GTTAACTTAA AGTACAACAA CGAAGACGTG
AGCGATGCGC AAGAGTTCAT TGTTGCAACC AACAATTACC GTGCAAACGG TGGCGTATTC
CCAGGTACGG GTAGCGATCA TATTGTTATT AACTCGCCAG ATACTAACCG TGAAGTGCTA
GCCAATTACA TTCGCGACAA CAGCCCCGTT ACGCCAACAG CAGATGGCAA CTGGAGCTTT
GCACCTATAG ATACCGTTAC AAATTTAACG ATAGTGTTCC GTGTGCCTAA CACCGACCGC
GCCCGTAACT TTGTAGCGGC TCAGTTGCAA AATGCTGAGT TTATAGAAGT GAACGATGCT
GGCGAAGCGG TATACGAGCT AATATTAAAT CAATAA
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| Protein sequence | MIHSKKSLPA LTLLSAAIML SACSGDDNKK PDVIAEVDLR LMETTDIHAN VMDYNYYSGS
TNIGIGLVRT ATLIKEARVE LTEMGNSVLV DNGDLIQGSP MGDWKQATGI EAGEVHPVYK
AMNELDYVVG NYGNHEFNYG LEFLAESVND ANFPYISANI FIDDGDDNPD NDMLYFDPYH
LETKAVMDKE GNTHEITIGF IGFLPPQIMQ WDKANLSGKV ITKDIKAMAE RFVPQMKEEG
ADIVVAIPHS GISTKAYSAD ALAEHSSWYL ADVEGIDAIM FGHSHLTFPS SAFAETEGVD
LEAGTIKGVP AVMPGYWGSH LGIIDLSLEY NVTQDTWQVV GSQVEARAIV VDGEATVEPD
AVIAANLEHD HQATIAYMGT PIGESTDDIF SFLALVKDDP SIQIVSDAQK AYVENLIQGD
VNLQDLPVLS AAAPFKACNR EGICADETSF TTVAKGELTL SNAADLYLYP NTLVAVKING
EELKGWLECS ASQFFQIDTT TTAQQELVDY AGFPTYNFDV MDGVTYQIDV TQPPRTDRSC
SVIHADANRI VNLKYNNEDV SDAQEFIVAT NNYRANGGVF PGTGSDHIVI NSPDTNREVL
ANYIRDNSPV TPTADGNWSF APIDTVTNLT IVFRVPNTDR ARNFVAAQLQ NAEFIEVNDA
GEAVYELILN Q
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