Gene Sde_0775 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0775 
Symbol 
ID3965828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1000437 
End bp1001393 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content46% 
IMG OID637919837 
Producttransaldolase B 
Protein accessionYP_526249 
Protein GI90020422 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.38826 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0662498 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGTA ATCAATTAGA TCAACTAAAA GCGCTAACCA CTGTTGTAGT CGACAGTGGT 
GATATCAATG CAGTGGCACG CTACCAGCCA GAGGATGCAA CCACCAACCC ATCGCTTGTA
CTAAAAGCAA TCGAACAGCC TGAGTACAAT CATTTAGTTG CACAAGCTGT AGCGTGGGCT
AAAGAATTTG CAAAAGATAA ACCTCTGGTA ACGGCAACAG CCGATAAACT TGCGGTTATG
CTGGGTTGCG AAATCCTTAA GCATATACCT GGTAGAGTAT CTACTGAAGT GGATGCGCAC
TTATCGTTCA ACACCGAAGC GACTATCGCC AAAGCATTAG AGCTGGTTGC AATGTACGAG
CAAGCGGGTG TAGATAAGTC GCGTATCTTA ATTAAAATTG CCTCCACTTG GGAGGGCATT
CAAGCTGCGA AACAGCTAGA GAAAATGGGC ATTCAATGTA ACCTAACGCT ATTATTCGGT
TTTGCTCAAG CGCAAGCGTG TGCCGAGGCG GGTGTGTTTT TAATTTCGCC ATTTGTGGGC
CGTATTTTAG ATTGGTACAA AAAAGACCAA CCCAATGCCG ATTTTACAGG CTTAAACGAC
CCCGGCGTTG TTTCAGTCAC TAAAATCTAT AACTTTTATA AAGCCTGTGG CTTTCAAACC
GTTGTAATGG GCGCAAGCTT CCGCAATGTG GGTGAGCTTC AGTCGCTAGC AGGCTGTGAT
CGACTCACCA TTAGCCCCGC CTTGTTAGAC GAGTTGCAAA ACCAAACTGC TCCTTTGGTA
GCACTGCTTG TAGATAAAGG TGTAAGTGAA GAAAAGCCTG CGCCTCTTAC TGAAGGTAGC
TTCCGTTGGG CAATGAACGA AGACCCAATG GCAACCGAAA AGTTAGCCGA GGGGATTCGC
AATTTCGCTA AAGATCAGGT TAAGCTGTAC CGTCTTATTG AAAAAGTTGC AGGTTAA
 
Protein sequence
MSSNQLDQLK ALTTVVVDSG DINAVARYQP EDATTNPSLV LKAIEQPEYN HLVAQAVAWA 
KEFAKDKPLV TATADKLAVM LGCEILKHIP GRVSTEVDAH LSFNTEATIA KALELVAMYE
QAGVDKSRIL IKIASTWEGI QAAKQLEKMG IQCNLTLLFG FAQAQACAEA GVFLISPFVG
RILDWYKKDQ PNADFTGLND PGVVSVTKIY NFYKACGFQT VVMGASFRNV GELQSLAGCD
RLTISPALLD ELQNQTAPLV ALLVDKGVSE EKPAPLTEGS FRWAMNEDPM ATEKLAEGIR
NFAKDQVKLY RLIEKVAG