Gene Sde_0769 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0769 
Symbol 
ID3966213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp993440 
End bp994402 
Gene Length963 bp 
Protein Length320 aa 
Translation table11 
GC content44% 
IMG OID637919831 
Productinner membrane ABC transporter permease protein YjfF 
Protein accessionYP_526243 
Protein GI90020416 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.539322 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0929356 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAACA GAAAGTTTTT ACCCCTTTAC GTAACATGCA GTTTATTTTT GGCATTATTT 
TTAGCCGGTT CTGTGCAGTT CGATAACTTC TTTACATTGC GCGTGTTTGT TAATTTATTT
ACCGATAACG CCTTTTTAAT TATTGCCGCA GTAGGTATGA CGTTTGTAAT TTTGTCTGGC
GGTATCGATC TTTCTGTCGG CTCTGTTATT GCGTTAACGG GTGTAGTGGT TAGTGTCTTG
CTCGAAAATT ATCAGTGGCA CCCGCTGGCC GCCTTTGCAG TTGTATTAGT GGGTGGTACC
GTATTTGGCG CAGCAATGGG GGCAATTATT CATTTTTATA AATTGCAGCC ATTTATTGTT
ACCTTGGCAG GTATGTTTTT TGCGCGCGGT TTAAGCACTA TTATTAGTGA AGAATCTGTG
CCAATCACCC ACGAGTTTTA CGACGACGTA AGCATGTTTG GCTTTGAACT GCCCGGCAAC
GCTTGGTTAG ATGCGTCCAC CATTATCAGT ATTGTTGTGC TAGTGGCGGC AATAATAATT
GCCAATTACA CCCGCTTTGG TGGCCGTGTT TACGCGTTGG GTGGCGATGC GCAGTCGGCG
GGTTTAATGG GTGTACCTAT CGCTCGTACT ACCATTAGTG TTTACGCATT TAATTCTTGT
TTGGCTGCGT TGGCGGGTAT TGTTTTTTCT TTTTATACCT TTTCGGGCTA TTCGTTGGCC
GCAGTAGGGG TAGAGCTAGA TGCTATAGCC GCAGTGGTTA TTGGCGGTAC GCTACTTACC
GGTGGTTACG GCTATGTGGT GGGCACCTTA TTTGGTGTAC TTATTATGGG CGTTGTGCAA
ACTTACATTT CGTTCGATGG TACGTTAAGT AGCTGGTGGA CGAAAATAGT AATAGGTGTG
CTTTTGTTTT GCTTTATAGC ATTGCAGCGA ATATTGGTGG CGCCGGGCGC AAAAACTCGT
TAG
 
Protein sequence
MINRKFLPLY VTCSLFLALF LAGSVQFDNF FTLRVFVNLF TDNAFLIIAA VGMTFVILSG 
GIDLSVGSVI ALTGVVVSVL LENYQWHPLA AFAVVLVGGT VFGAAMGAII HFYKLQPFIV
TLAGMFFARG LSTIISEESV PITHEFYDDV SMFGFELPGN AWLDASTIIS IVVLVAAIII
ANYTRFGGRV YALGGDAQSA GLMGVPIART TISVYAFNSC LAALAGIVFS FYTFSGYSLA
AVGVELDAIA AVVIGGTLLT GGYGYVVGTL FGVLIMGVVQ TYISFDGTLS SWWTKIVIGV
LLFCFIALQR ILVAPGAKTR