| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0716 |
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| Symbol | |
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| ID | 3965275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 925981 |
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| End bp | 927822 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637919777 |
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| Product | Fis family transcriptional regulator |
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| Protein accession | YP_526190 |
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| Protein GI | 90020363 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000378476 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAC AGGCGAAAAA GCAGTCCCGC ATCAAAGAAT TGATCAACCG CGGCCGAGAA
CAGGGCTATC TCACCTACGA TGAAGTAAAC GATCATCTAC CCGACGATAT TTCTGATCCC
GATCAGGTTG AAGACATCAT CCAAATGATT AACGACATGG GTATTCGCGT GTACGAAGTT
GCACCCGATG CCGATGAGCT GTTAATGACC GATGGCGATT CTTCCGCGGA CGAAATAGCA
GCAGCAGAAG CTGCCGCAGC ACTGGCGGCG GTAGAAACCG AAGCTGGTCG CACCACAGAC
CCTGTGCGTA TGTATATGCG CGAAATGGGA ACAGTAGAGC TGCTTACTCG CGAAGGCGAA
ATAGCAATTG CCAAACGCAT AGAAGAAGGC CTGCGCGAAC TAAACCACGC CATCGCCCTT
TGGCCAGAGG CAGTACAGCA ATACGTAAAC GAATACGATC TAGTCGAAAA AGAAGAGCGC
CGCCTAGCAG ACGTCATTAG CGGCTGGCTC GACCCCGCCG AAGACGTAGC CCCCCCCGTT
GTAGCCGCCG AAACCGCAGA AGACACCGAT TCCGACGATG ATGATGACGA CGATGACGAT
ACCGACACCG AGGACGAAGA AGAGTCCACC GGTATCGACC CCGAATACGC ACGCGAGCGC
TTCGACGAGC TAAAAGCCGC CCTGCTTAAA GTAGAAAAAG CCATTGCCAA GCACGGCTTC
GAAAGCAAAG CAGCAGGCAA AGAAATGGAA GCGTTGGGCG AAATATTCAA ATATTTCAAA
CTGCCACCGC GCCAGTTCGA CCCTATTTAC CAAGGTATTC GTCAAATACT TACCCGCGTA
CGTGCAGAAG AGCGTGAAAT TATGCGCTTG TGTACCCGCC TAGGTGGTAT GCCACGCAAA
ACCTTCATGA AAGAATTCCC CGGCCAAGAA ACCGATGAAG ATTGGATTCC AGCTACCATT
GGCAAAGGCC GCGACTACTC CGATTCGCTA AAGCCCTACG CAGAGGACAT TATTCGTGCG
CAGCGTAAAC TTAAGCAAAT TCAAGAAGAG TCTGGCTTAA GCCTTGGCCA CATTAAAGAA
ATTAACCGTC GCATGTCCAT TGGCGAAGCC CGTGCACGTC GCGCTAAGAA GGAAATGGTA
GAAGCCAACC TTCGCTTGGT AATTTCTATT GCTAAAAAAT ACACCAACCG CGGTTTGCAG
TTCTTAGATC TTATCCAAGA AGGCAACATC GGCCTAATGA AGGCCGTAGA TAAATTCGAA
TACCGTCGCG GTTACAAGTT CTCTACCTAC GCCACTTGGT GGATTCGTCA GGCCATTACC
CGCTCTATTG CGGATCAGGC CCGCACTATC CGTATTCCAG TGCACATGAT AGAGACCATA
AACAAACTAA ACCGTATCTC TCGTCAAATG CTTCAAGAAA TGGGCCGCGA GCCCACACCA
GAAGAGCTAG GCGAGCGCAT GGAAATGCCA GAAGATAAAG TTCGCAAGGT ACTTAAAATT
GCCAAAGAAC CTATCTCTAT GGAAACCCCA ATTGGCGACG ATGAAGATTC CCACCTAGGC
GACTTCATTG AAGACACCAC CATCGACTCA CCCGTCGATT CTGCCACCAT CCAAGGCCTA
ACAGAAGCCA CTCGCTCGGT ACTTGCAGGC CTAACCGCCC GCGAAGCAAA AGTACTAAGA
ATGCGCTTTG GTATAGATAT GAATACCGAC CACACCTTGG AAGAAGTGGG CAAACAATTT
GACGTAACCC GTGAGCGTAT CCGTCAAATT GAAGCCAAAG CCCTGCGCAA ACTGCGTCAC
CCTAGCCGCT CTGACCACTT GCGCGGCTTC CTAGACGACT AG
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| Protein sequence | MSEQAKKQSR IKELINRGRE QGYLTYDEVN DHLPDDISDP DQVEDIIQMI NDMGIRVYEV
APDADELLMT DGDSSADEIA AAEAAAALAA VETEAGRTTD PVRMYMREMG TVELLTREGE
IAIAKRIEEG LRELNHAIAL WPEAVQQYVN EYDLVEKEER RLADVISGWL DPAEDVAPPV
VAAETAEDTD SDDDDDDDDD TDTEDEEEST GIDPEYARER FDELKAALLK VEKAIAKHGF
ESKAAGKEME ALGEIFKYFK LPPRQFDPIY QGIRQILTRV RAEEREIMRL CTRLGGMPRK
TFMKEFPGQE TDEDWIPATI GKGRDYSDSL KPYAEDIIRA QRKLKQIQEE SGLSLGHIKE
INRRMSIGEA RARRAKKEMV EANLRLVISI AKKYTNRGLQ FLDLIQEGNI GLMKAVDKFE
YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI NKLNRISRQM LQEMGREPTP
EELGERMEMP EDKVRKVLKI AKEPISMETP IGDDEDSHLG DFIEDTTIDS PVDSATIQGL
TEATRSVLAG LTAREAKVLR MRFGIDMNTD HTLEEVGKQF DVTRERIRQI EAKALRKLRH
PSRSDHLRGF LDD
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