Gene Sde_0684 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0684 
Symbol 
ID3964935 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp870285 
End bp872642 
Gene Length2358 bp 
Protein Length785 aa 
Translation table11 
GC content45% 
IMG OID637919745 
ProductDNA primase 
Protein accessionYP_526158 
Protein GI90020331 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3250] Beta-galactosidase/beta-glucuronidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.113069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000509357 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATATTA AAACCCTTTT TATCGCGCAG CTCGTATGCG TGCTGATATT GTTGCAGGGG 
TGTAACTCTA ATCAGAATAA CAGCCTGCGC GATGAGAATA ATTTACACAC GCCTGCCACC
TTGTTTAACG CTAATTGGCA GTTCCAAAAA TCAGATACCG TATTAAGCCT GCAGCAAGCA
GCGGAGCTGG AAGGTTGGCA AACGGTAAGC CTGCCACACA CCGCAAATAT AGAGCCAAGA
ATTGTAAACA ACCAATGGCA GGGTGACGCA TGGTATAAAA AGAAAATCAC CTACAACAAT
GCGTGGGATG GAAAAAAAGT TATTTTAGAT TTTGAAGGCG CCATGAACGA AGCGCAGGTT
TGGCTAAATG GCGAATTGGT TGCAACCCAT CGCGGTGGTT ACTTGCCTTT TTCGGTAAAC
CTTACCGGTA AACTAACCGC AGGCGACAAC GAATTAATGG TGCGTTTAGA TAATCGCGAC
AACCCCATTA CAGGCCCCAA ACCTTTAGAC ATTTTAGATT TTAATATGTT TGGCGGTATT
TATCGCAACG TATGGTTGCG GGTAGAAAAC CCCACCCATA TTTCCAATGC TGTTGCTGCA
AACAAGGTAG CGTCCGGTGG AATATTTGTT ACCTACCCAA AAGCAAGCAA AGCCGAAGCG
TTTGTAAAAG TGCAAACCCA TATCTATACA CCTGTAGCTA ATCAAGATGT ATTGGTGCAA
CACACGCTTA CCTATAAAGG TGAACAAGTA GCCTTAGCTC AACAAATTAT TGCCGATAAC
ACTCAACCCG ATCACGAAGA TGTGCAACTA ATAACCGTGA CCAAGCCCGC ACTGTGGTCG
CCAGCGGAGC CAAATTTGTA TCAACTTAAT ACGCAGGTTA TTGTTGATGG CAAAGTGTTA
GACGAAGAGA ATACGCAAAT AGGTATCCGC GAATTTACCT TTAAAGAAAA CCAGCTTTAT
ATTAACGGCG AAAAAACGTT TTTACGCGGT GTAAACCGCC ATCAGGAATA CCCATACATA
GGTTATGCGC TTTCCGATGC TGCCCAGTAT CGCGATGCAG AAAAAATTAA AGCGGCGGGT
TTCGACTATG TTCGCCTATC TCACTACCCA CATTCTACGG CCTTTATGAA AGCTGCGGAT
GAGTTGGGCC TTGTATTAAT AGATGCAATT TTAGGCTGGC AGTTTGTGTC TGAAGATCCC
GCTTTTCAAA ATCATGTAGT GCAAACCTGT CGCGACATGA TTCGTCGCGA TCGCAATCAC
GCGTCGGTAC TTGCATGGGA GTGTTCACTT AACGAATCGT GGATGGAAGA GCCATTAATC
GACCGCTTCC ACACTGCCGT TCACGAAGAA ATGCCAACCA CCACCACTTA CTCGGCGGGT
TGGCAAGCCT ATGGTTATGA TGTGTATCTG CAAGCGCGTC AACATCGCTT GCAGCATTAC
GATACACCCA CTAAACCCTA TGTCGTGTCT GAGTATGGCG ACTGGGAATA CTACGCCATG
AACGCCGGTT TAAATCAAGA CGCATGGGGC GAGCTTAAAC AAGCCAATCG TTCAAGCCGA
CAATTACTCA GCGATGGTGA AAAGCGCCTT CAGCAGCAGG CCGCCAATAT TACCGAGGCG
CACGACGATA ATTTCAATAC CCCAGCTTTT TCTGATGGCT ACTGGGTAAT GTTTGATTAC
AACCGCGGTT ATGCCGACGA TTTAGAAGCA TCAGGCATAA TGAGCTTAGA ACGCCTGCCC
AAATTTAGTT ACTACTTCTA TCAAAGTCAA CGCCCTGCTA ACGAGCAGGC TGGGCCTTTA
GCTAACGGCC ATATGGTGTA TATAGCTAGC CATTGGCAAG TAGGTTCAAG CTTAGAATTT
GCCGTGTATT CCAATGCCGA CAAAGTGCAG GTTACCTTAA ATGGCAAACA GTTAAGTGGT
GAGCGCGCAA CAAAACAGTA CCCCAACTTG CGCTTTGCTC CATTTATTTT TAAAGCCGAT
AAATTTGCAG CAGGTGAGTT AGTGGCAAAA GCCTTTGCCA ATGGTAAGCA AGTGGCAACC
CATAAAGTGG TTACACCCAC TAAAACTGCC AGTATTGCGC TAAGTTTAGA AAAATCTTCT
AAGCCTGTGC AGGTAGGCGT TGGCGATACC GTATTTGTTT ACGCCAAGGT GTTAGATACA
AACGGCAATA ACAGCCGTGT TAACAACTTC CCTGTAAGTA TTCGTTTGGA AGGCGATGCG
CAACTGCTAT CGCCGGCCAA TGTTAATACA GAAGATGGCA TCGCAGCGGC TTTAATACGC
GTTGGCAGCG ATCTTTCATC AATTCGTATT TCCGCCTCTG CCGATAAAGT AGAAGATGCG
TTTTTAGAAA TTAAATAA
 
Protein sequence
MNIKTLFIAQ LVCVLILLQG CNSNQNNSLR DENNLHTPAT LFNANWQFQK SDTVLSLQQA 
AELEGWQTVS LPHTANIEPR IVNNQWQGDA WYKKKITYNN AWDGKKVILD FEGAMNEAQV
WLNGELVATH RGGYLPFSVN LTGKLTAGDN ELMVRLDNRD NPITGPKPLD ILDFNMFGGI
YRNVWLRVEN PTHISNAVAA NKVASGGIFV TYPKASKAEA FVKVQTHIYT PVANQDVLVQ
HTLTYKGEQV ALAQQIIADN TQPDHEDVQL ITVTKPALWS PAEPNLYQLN TQVIVDGKVL
DEENTQIGIR EFTFKENQLY INGEKTFLRG VNRHQEYPYI GYALSDAAQY RDAEKIKAAG
FDYVRLSHYP HSTAFMKAAD ELGLVLIDAI LGWQFVSEDP AFQNHVVQTC RDMIRRDRNH
ASVLAWECSL NESWMEEPLI DRFHTAVHEE MPTTTTYSAG WQAYGYDVYL QARQHRLQHY
DTPTKPYVVS EYGDWEYYAM NAGLNQDAWG ELKQANRSSR QLLSDGEKRL QQQAANITEA
HDDNFNTPAF SDGYWVMFDY NRGYADDLEA SGIMSLERLP KFSYYFYQSQ RPANEQAGPL
ANGHMVYIAS HWQVGSSLEF AVYSNADKVQ VTLNGKQLSG ERATKQYPNL RFAPFIFKAD
KFAAGELVAK AFANGKQVAT HKVVTPTKTA SIALSLEKSS KPVQVGVGDT VFVYAKVLDT
NGNNSRVNNF PVSIRLEGDA QLLSPANVNT EDGIAAALIR VGSDLSSIRI SASADKVEDA
FLEIK