| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0684 |
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| Symbol | |
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| ID | 3964935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 870285 |
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| End bp | 872642 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919745 |
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| Product | DNA primase |
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| Protein accession | YP_526158 |
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| Protein GI | 90020331 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.113069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000509357 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATATTA AAACCCTTTT TATCGCGCAG CTCGTATGCG TGCTGATATT GTTGCAGGGG
TGTAACTCTA ATCAGAATAA CAGCCTGCGC GATGAGAATA ATTTACACAC GCCTGCCACC
TTGTTTAACG CTAATTGGCA GTTCCAAAAA TCAGATACCG TATTAAGCCT GCAGCAAGCA
GCGGAGCTGG AAGGTTGGCA AACGGTAAGC CTGCCACACA CCGCAAATAT AGAGCCAAGA
ATTGTAAACA ACCAATGGCA GGGTGACGCA TGGTATAAAA AGAAAATCAC CTACAACAAT
GCGTGGGATG GAAAAAAAGT TATTTTAGAT TTTGAAGGCG CCATGAACGA AGCGCAGGTT
TGGCTAAATG GCGAATTGGT TGCAACCCAT CGCGGTGGTT ACTTGCCTTT TTCGGTAAAC
CTTACCGGTA AACTAACCGC AGGCGACAAC GAATTAATGG TGCGTTTAGA TAATCGCGAC
AACCCCATTA CAGGCCCCAA ACCTTTAGAC ATTTTAGATT TTAATATGTT TGGCGGTATT
TATCGCAACG TATGGTTGCG GGTAGAAAAC CCCACCCATA TTTCCAATGC TGTTGCTGCA
AACAAGGTAG CGTCCGGTGG AATATTTGTT ACCTACCCAA AAGCAAGCAA AGCCGAAGCG
TTTGTAAAAG TGCAAACCCA TATCTATACA CCTGTAGCTA ATCAAGATGT ATTGGTGCAA
CACACGCTTA CCTATAAAGG TGAACAAGTA GCCTTAGCTC AACAAATTAT TGCCGATAAC
ACTCAACCCG ATCACGAAGA TGTGCAACTA ATAACCGTGA CCAAGCCCGC ACTGTGGTCG
CCAGCGGAGC CAAATTTGTA TCAACTTAAT ACGCAGGTTA TTGTTGATGG CAAAGTGTTA
GACGAAGAGA ATACGCAAAT AGGTATCCGC GAATTTACCT TTAAAGAAAA CCAGCTTTAT
ATTAACGGCG AAAAAACGTT TTTACGCGGT GTAAACCGCC ATCAGGAATA CCCATACATA
GGTTATGCGC TTTCCGATGC TGCCCAGTAT CGCGATGCAG AAAAAATTAA AGCGGCGGGT
TTCGACTATG TTCGCCTATC TCACTACCCA CATTCTACGG CCTTTATGAA AGCTGCGGAT
GAGTTGGGCC TTGTATTAAT AGATGCAATT TTAGGCTGGC AGTTTGTGTC TGAAGATCCC
GCTTTTCAAA ATCATGTAGT GCAAACCTGT CGCGACATGA TTCGTCGCGA TCGCAATCAC
GCGTCGGTAC TTGCATGGGA GTGTTCACTT AACGAATCGT GGATGGAAGA GCCATTAATC
GACCGCTTCC ACACTGCCGT TCACGAAGAA ATGCCAACCA CCACCACTTA CTCGGCGGGT
TGGCAAGCCT ATGGTTATGA TGTGTATCTG CAAGCGCGTC AACATCGCTT GCAGCATTAC
GATACACCCA CTAAACCCTA TGTCGTGTCT GAGTATGGCG ACTGGGAATA CTACGCCATG
AACGCCGGTT TAAATCAAGA CGCATGGGGC GAGCTTAAAC AAGCCAATCG TTCAAGCCGA
CAATTACTCA GCGATGGTGA AAAGCGCCTT CAGCAGCAGG CCGCCAATAT TACCGAGGCG
CACGACGATA ATTTCAATAC CCCAGCTTTT TCTGATGGCT ACTGGGTAAT GTTTGATTAC
AACCGCGGTT ATGCCGACGA TTTAGAAGCA TCAGGCATAA TGAGCTTAGA ACGCCTGCCC
AAATTTAGTT ACTACTTCTA TCAAAGTCAA CGCCCTGCTA ACGAGCAGGC TGGGCCTTTA
GCTAACGGCC ATATGGTGTA TATAGCTAGC CATTGGCAAG TAGGTTCAAG CTTAGAATTT
GCCGTGTATT CCAATGCCGA CAAAGTGCAG GTTACCTTAA ATGGCAAACA GTTAAGTGGT
GAGCGCGCAA CAAAACAGTA CCCCAACTTG CGCTTTGCTC CATTTATTTT TAAAGCCGAT
AAATTTGCAG CAGGTGAGTT AGTGGCAAAA GCCTTTGCCA ATGGTAAGCA AGTGGCAACC
CATAAAGTGG TTACACCCAC TAAAACTGCC AGTATTGCGC TAAGTTTAGA AAAATCTTCT
AAGCCTGTGC AGGTAGGCGT TGGCGATACC GTATTTGTTT ACGCCAAGGT GTTAGATACA
AACGGCAATA ACAGCCGTGT TAACAACTTC CCTGTAAGTA TTCGTTTGGA AGGCGATGCG
CAACTGCTAT CGCCGGCCAA TGTTAATACA GAAGATGGCA TCGCAGCGGC TTTAATACGC
GTTGGCAGCG ATCTTTCATC AATTCGTATT TCCGCCTCTG CCGATAAAGT AGAAGATGCG
TTTTTAGAAA TTAAATAA
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| Protein sequence | MNIKTLFIAQ LVCVLILLQG CNSNQNNSLR DENNLHTPAT LFNANWQFQK SDTVLSLQQA
AELEGWQTVS LPHTANIEPR IVNNQWQGDA WYKKKITYNN AWDGKKVILD FEGAMNEAQV
WLNGELVATH RGGYLPFSVN LTGKLTAGDN ELMVRLDNRD NPITGPKPLD ILDFNMFGGI
YRNVWLRVEN PTHISNAVAA NKVASGGIFV TYPKASKAEA FVKVQTHIYT PVANQDVLVQ
HTLTYKGEQV ALAQQIIADN TQPDHEDVQL ITVTKPALWS PAEPNLYQLN TQVIVDGKVL
DEENTQIGIR EFTFKENQLY INGEKTFLRG VNRHQEYPYI GYALSDAAQY RDAEKIKAAG
FDYVRLSHYP HSTAFMKAAD ELGLVLIDAI LGWQFVSEDP AFQNHVVQTC RDMIRRDRNH
ASVLAWECSL NESWMEEPLI DRFHTAVHEE MPTTTTYSAG WQAYGYDVYL QARQHRLQHY
DTPTKPYVVS EYGDWEYYAM NAGLNQDAWG ELKQANRSSR QLLSDGEKRL QQQAANITEA
HDDNFNTPAF SDGYWVMFDY NRGYADDLEA SGIMSLERLP KFSYYFYQSQ RPANEQAGPL
ANGHMVYIAS HWQVGSSLEF AVYSNADKVQ VTLNGKQLSG ERATKQYPNL RFAPFIFKAD
KFAAGELVAK AFANGKQVAT HKVVTPTKTA SIALSLEKSS KPVQVGVGDT VFVYAKVLDT
NGNNSRVNNF PVSIRLEGDA QLLSPANVNT EDGIAAALIR VGSDLSSIRI SASADKVEDA
FLEIK
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