| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0683 |
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| Symbol | |
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| ID | 3964934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 869047 |
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| End bp | 870240 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919744 |
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| Product | sigma-70 factor |
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| Protein accession | YP_526157 |
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| Protein GI | 90020330 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00481968 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000266294 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTATTAG CTCAATTGCC AGTTAAAAAA TATTTTGTCT TATTAGCTAT TTTCTCGTTT
ATGCTGGGGT GTAATAGTGC TGGCGTACAA CAAAGTGCTA AATCAATTCA GGTTGCTGGC
ACGCACAGTA AACCCGCTCG TTTTTTTGCT GGTGCCGACC TTTCTTACGT AAACGAAATG
GAAGATTGCG GAGCAACATA CCGCGTAAAC GGTGTAACTA CCGACCCTTA CCAAGCCTTT
GCCGATGCCG GCGCAAATTT AGTGCGCGTG CGCTTATGGC ACAACCCTAC TTGGACAGAA
TATTCCGACT TTGCCGACGT TAAAAAAACT ATCCGCAAAG CCAAACAAAA TAATCAAACG
GTATTGTTAG ATTTTCATTA TTCAGATACC TGGGCCGACC CAGAAAAACA ATTTGTTCCA
GCCGCTTGGG AACATATGGT GGATGACACC CCAGCACTAG CGCAAGCCTT AGCGCAATAC
ACAACCGATG TATTAGAAAA GCTGCAAGCA GAAAACCTAT TGCCAGATAT GGTGCAAGTA
GGTAACGAAA CAAACGCAGA AGTCTTACAG CTAGAAGCGC ACATGAAACA CGGCGAAATA
GATTGGCAGC GCAATGCAGC GCTACTAAAC AGTGGGTTAG CAGCCGTTGC TGAATTTAAC
CAAAACAACA ACACCTATAT TGAACGCGTA TTACATATCG CCCAGCCAGA AAATGCTTTG
TGGTGGTTTG ACGATGCCGC GCAGGCTGGC ATAACCGATT TTGAAATTAT AGGTCTTAGC
TACTATGCCA AATGGTCAAC GTATAAATTA GATTCCATCG GCGAAGCTAT ACGCGCCTTG
CGAACCGCAT TCAATAAAGA TGTGTTGGTG GTAGAAACCT CATACCCCTG GACTATGCAA
AATTTCGATC AAGCCAATAA CGTGCTCGAT GCTACCAGCT TGCAGCAGGG CTACCCTGCA
ACGGCCGAAG GCCAAAAAAA ATACATGATG GATTTAGCTA AACAAATTAT GTACGCCGGT
GGAATTGGTA TTGCCTACTG GGAACCAGCT TGGGTAAGCA CCCCTTGCAA AACTCTATGG
GGTACAGGTT CTCACTGGGA AAATGCCGTG TTTTTTGACT CTGGCAACAA CAACGAAGCG
CTACCCGCGC TTAGTTTCTA CACAGACATA ATGGCTCTTT TTAAGCAAGA TTAA
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| Protein sequence | MLLAQLPVKK YFVLLAIFSF MLGCNSAGVQ QSAKSIQVAG THSKPARFFA GADLSYVNEM
EDCGATYRVN GVTTDPYQAF ADAGANLVRV RLWHNPTWTE YSDFADVKKT IRKAKQNNQT
VLLDFHYSDT WADPEKQFVP AAWEHMVDDT PALAQALAQY TTDVLEKLQA ENLLPDMVQV
GNETNAEVLQ LEAHMKHGEI DWQRNAALLN SGLAAVAEFN QNNNTYIERV LHIAQPENAL
WWFDDAAQAG ITDFEIIGLS YYAKWSTYKL DSIGEAIRAL RTAFNKDVLV VETSYPWTMQ
NFDQANNVLD ATSLQQGYPA TAEGQKKYMM DLAKQIMYAG GIGIAYWEPA WVSTPCKTLW
GTGSHWENAV FFDSGNNNEA LPALSFYTDI MALFKQD
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