| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0682 |
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| Symbol | |
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| ID | 3964933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 866249 |
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| End bp | 868975 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919743 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_526156 |
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| Protein GI | 90020329 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000218654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000544353 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCGTT TTAATTCGCT CACTACCAAT GCCAGTACAC GCGTTATCGC GTTGGCCTTG
GGCTTGGTTT CTACCGTTAG TTTTGCGCAA GAAGAAAATG TAGACGCAAA CCTAGAAGAA
GTGATTGTTG TTGGTAAGTA CCAAGCCAGT TTGCAATCTG CATTGGAACG CAAACGCGGT
TCCGCAAGTG TAATAGAAGC TATTTCAGCA GAAGACATTG GCCAACTGCC CGATGTGTCT
ATTACCGAAA GCTTGGCGCG CTTACCCGGT GTTGCGCAAG ACCGCGATCG CGGTAACGGC
AGTCAAATTT CTATTCGCGG TATGGGCGGT CAATTGGGTT TAACCACCTT AAACGGTCGC
GAAGTGGCCA CGGTAGAAGA AGATCGCAAC ATTCGCTACG ACCAGTTCCC CTCTGAATTA
ATTAACGCTG CGCAAGTGTA CAAAACGCCG CAGGCAAAAA TTGCTGAGGG TGGCGTATCG
GGTACGGTAA ACCTAGAAAC CATCTCCCCA TTAGATTACG ACGAGCGTGT TATTGCGGTT
AATTTGCGCG GCTCTTCTTA TTCACTAGGT AAAGATATAG ACGATGCTGC TGGCGGCGGT
ATTGGTACGC GTTACAGTGT TTCTTATATA GATAAATTTG TCGACGACAC ATTAGGTGTG
GCCATTGGTA TTGCCGGCCA AAATCAACCC ATTGCAACTC AGCGCGCAGA GCTGTGGAAC
TATGGTGATA CGTGGCACAA CACTCAATGG AACGACGAAG AAGGCAAAAA CTTTAACGCG
CCTTGGGGTG GTTCGGCCCT AGTTCGCGGC GGTGAAGATT CCCGCGTAGG CGGCATGGCT
GTCGTGCAGT GGGAGCCCAC CGAAAACTTT GCATTAAGTT ACGATTTCTT TTACTCGCAG
CTAGATATTA GCGAAGAGCA ACGCGGTTTC GATTTTAATA TCGACCCCGA TTACGCGCGC
CAGTGGGATA TTAACGATTC AGTTGCCACA CAATTTACCA ACTCGGATGA AAATGCCGAA
GATGTACTAA GCGCGCACGT TGGTTTAAGT TCTTTGCGCA GCTTAAATGA AAAGTTTACT
CAAACCGACG ATTTAATGAG CCACGGCTTA ACCGCAGACT GGTATGTAGG TGGTTGGAAT
TTAGTGGGTG CAGTGTCGCA CTCCGCAACT AATCGCGATC GTATGTGGCA ATCGGTACGT
ACAGTAAACA CCTCCGAAAA TTTAGGCGGT ACTTTCGGTG CTAACAGCGA TGACCGCATG
ACGTTTGCGT TGGATACCGG TATAGATTTA ACCGACCCTG CACAAAACCG CGTAGATAAC
CTAACCGTTA ACCCGCTCTC TGTGGGTGAA GATGCTATTA CCGCAATTGA ATTTAGTGCA
GAACGTGAAT TAAACGGTTC GTTTTTCTCA TCGTTTGAAG TGGGTGCACG TGTATCCGAG
CGCGTTAAAA AGCAGGATGC GCAAACGTGG GACCAATTTG TAGTAAACAA TTGGGATGTA
GCATTAACCG ACGAGTTTAT TATCGACGCC GGAGCTAAAT CTTATTGGAG CGACTTGCCT
GATTACTTAA CTATCGATCG CGAAGCCGTT ATCGACTACT ACTTTGGCAG CATCGAAAAC
CCAACCCCTG GCGACAACGA CGACCTATTA GCTAGCTGGG AAGTAAGTGA AGATATTCAG
TCGGCATACG TACAGCTAAA CATAGATACA CAACTGGGCA GCATTCCAAT GCGCGGTAAT
GTGGGGGTGC GCGCAGTAAC AACAACAACG GGCACAAAAG GTTATCAAGT GCTATCCGCA
AGTACGTGGG TAGAAGAACC TGTAGGTTCT GGGGTATGGG TAGAAGTTTT ACCGTCGGCC
GAGCAGGTGG AAACCGAGCA CAGCTATGAC GATTTCTTAC CCAGCGTTAA CTTGGCGTTC
GAATTGCGTG ATGACCTAGT TTTACGTTTA GGCGCAGCAA AAACGATTGC TCGCGCACCG
TTAGACTTCT TAAGCCCAGC GGTAGACATC GGCCAAGATC AATGGGCACC TAACCCTGGT
GAATCCGCGT CGGGTAACCC ATACCTAGAG CCGTTCCGTG CCACTCAAGG CGACACTACC
TTGGAATGGT ACTTTGGTGA TAGCAACTCT ATAGCTGCCA CCTTGTACTA CAAAGATATG
GAATCGTACA TTGCACGTCA GGCGGGTGCA GAATCTATCA CTGTAGACGG CACCGACTAC
CTATTGTCGT TACCTGTAAA CGGCAGTGGC GGCTACATCA AAGGTTACGA AATCTCCTAT
CAGCAAGCGT TCGACTTTTT GCCAAGGCCG TTTAGTGGTT TAGGTGTGTA TGCCAACTAC
GCCAATACTT CTTCAAATAT CGAACAAGGT ACGCCACTAA ATGCAACGCC ATTTGGTTTG
ACGGGTTTGT CTGAAGATGT AGGTACATTT ACGCTTTGGC ATTACTTAAA TGGTTTTGAA
AGCCGCTTGT CTTACAATTA CCGCAGCGAA TTCCAACGCG ATATTAGCCG CGTAGCTGGC
GAAGAAGGCG TGAACGCCGC AGAAGGTTAC ATGGATTTAG CATTCTCTTA CGAGCTAAAC
GAAAATGTAA AACTTATGTT GCAAGTACAA AACCTAACCG ATGAACCTTA CAAAGTGTAT
GGCTTAGAGT CTAACAACCC TAATCACATT AATAAGTTTG AAGAGTTTGG ACAGCGCTAC
AGCTTTGGTA TTAGCTGGAA GCTGTAA
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| Protein sequence | MNRFNSLTTN ASTRVIALAL GLVSTVSFAQ EENVDANLEE VIVVGKYQAS LQSALERKRG
SASVIEAISA EDIGQLPDVS ITESLARLPG VAQDRDRGNG SQISIRGMGG QLGLTTLNGR
EVATVEEDRN IRYDQFPSEL INAAQVYKTP QAKIAEGGVS GTVNLETISP LDYDERVIAV
NLRGSSYSLG KDIDDAAGGG IGTRYSVSYI DKFVDDTLGV AIGIAGQNQP IATQRAELWN
YGDTWHNTQW NDEEGKNFNA PWGGSALVRG GEDSRVGGMA VVQWEPTENF ALSYDFFYSQ
LDISEEQRGF DFNIDPDYAR QWDINDSVAT QFTNSDENAE DVLSAHVGLS SLRSLNEKFT
QTDDLMSHGL TADWYVGGWN LVGAVSHSAT NRDRMWQSVR TVNTSENLGG TFGANSDDRM
TFALDTGIDL TDPAQNRVDN LTVNPLSVGE DAITAIEFSA ERELNGSFFS SFEVGARVSE
RVKKQDAQTW DQFVVNNWDV ALTDEFIIDA GAKSYWSDLP DYLTIDREAV IDYYFGSIEN
PTPGDNDDLL ASWEVSEDIQ SAYVQLNIDT QLGSIPMRGN VGVRAVTTTT GTKGYQVLSA
STWVEEPVGS GVWVEVLPSA EQVETEHSYD DFLPSVNLAF ELRDDLVLRL GAAKTIARAP
LDFLSPAVDI GQDQWAPNPG ESASGNPYLE PFRATQGDTT LEWYFGDSNS IAATLYYKDM
ESYIARQAGA ESITVDGTDY LLSLPVNGSG GYIKGYEISY QQAFDFLPRP FSGLGVYANY
ANTSSNIEQG TPLNATPFGL TGLSEDVGTF TLWHYLNGFE SRLSYNYRSE FQRDISRVAG
EEGVNAAEGY MDLAFSYELN ENVKLMLQVQ NLTDEPYKVY GLESNNPNHI NKFEEFGQRY
SFGISWKL
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