| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0664 |
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| Symbol | |
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| ID | 3967638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 845224 |
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| End bp | 846147 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637919725 |
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| Product | response regulator receiver modulated diguanylate cyclase |
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| Protein accession | YP_526138 |
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| Protein GI | 90020311 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00416303 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACTAA AAAGTATTAC AGTGTACCTT GTGGAAGACG ATCCAGATGA TCAATACCTC
CTCAAGTTGA TGCTGCAAAA GGACCCGCAG TTTGAATACC GAGTGCACTG TTTTGCTAGG
TTAAATGAAT GCTTGGCCTC CAGTGATGAA GAAACACCAG ATTTAATCCT ACTCGACCTT
ATACTACCCG ACAGTACAGG CGAGGAAACG TTGGTGACTG TGCTAGACAA TTACCGCCAT
ACCCCAGTGA TAGTATTAAC GGGGGTCGAC ATGGGCGATA TTGGTGAGCG CGCAGTTGGC
ATAGGAGCAC AAGACTACCT GCGTAAAAAT GAATTAAGCC AAACGGCCTT GGGGCAATCC
ATTCGTTACG CGTTAGAGCG CCACTCTTTA GTAAAAGAGT TACACCACAG AGCAATCACC
GATTACCTTA CCGGTTTATT AAATCGCTCT GCGTTTATAG AGCGTTTAGA TCACGAGCTG
GCGCATGCCG AGCGTTACAA ACATATGTTT GCTGTAGCAA GTATCGATTT AGATAATTTT
AAACAGGTGA ATGATACGCT GGGTCACGGT GTTGGCGACA AGGTGCTTAT CGAGTTTGGA
CAAATACTTG AAAAATGCAC CCGTCGTAGC GACACGCCGG CGAGGTTTGG TGGCGATGAA
TTCGTTGTGT TACTTACTCG TTTAGAGTCA GTTGACGATG CTTTAGATAT TGTTGCTAAA
AAGCATCAAG AGCTAATTGC AGCTCTTGAT GAATATGTGA TTAGTCAGGT GGGTGACAAA
GTGGATTTGG GATTAAGTAT TGGTGTGGCT GTTTACCCCA GTGATGGCAC GAGTGTAGAT
CAATTACTTA TTGCTGCAGA CAAAGCATTA TATAAAAGTA AGCGAGCAGG CAAAAATACC
TTTTATCTTA CTGGTAAGGC GTAA
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| Protein sequence | MELKSITVYL VEDDPDDQYL LKLMLQKDPQ FEYRVHCFAR LNECLASSDE ETPDLILLDL
ILPDSTGEET LVTVLDNYRH TPVIVLTGVD MGDIGERAVG IGAQDYLRKN ELSQTALGQS
IRYALERHSL VKELHHRAIT DYLTGLLNRS AFIERLDHEL AHAERYKHMF AVASIDLDNF
KQVNDTLGHG VGDKVLIEFG QILEKCTRRS DTPARFGGDE FVVLLTRLES VDDALDIVAK
KHQELIAALD EYVISQVGDK VDLGLSIGVA VYPSDGTSVD QLLIAADKAL YKSKRAGKNT
FYLTGKA
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