Gene Sde_0652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0652 
Symbol 
ID3964981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp825854 
End bp827563 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content52% 
IMG OID637919713 
ProductBeta-glucanase/Beta-glucan synthetase-like 
Protein accessionYP_526126 
Protein GI90020299 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2273] Beta-glucanase/Beta-glucan synthetase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.307266 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAAAAA CATGCAAAAC CACACCAGCC AAGTGGGCAG CAGCCCTTAG CTTAGGCTGC 
GCCCTACTTT TACCCTCAGG CGTCAATGCT GCCACCTTCC AAGCAGAAGA TTACAGCGCC
TTCTACGACA CCACCGCGGG TAACACTGGC GGCGCCTACC GCAATGATAA CGTCGATATA
GAAGCCACCA ATGATAACGG CGGCGGCTAT AACGTGGGCT GGATAGATGC CAACGAATGG
CTGGTATACC CAGGCGTAAA TATCACCACC ACCGGCGACT ATGTAATTAA TGTACGCGTG
GCGAGCGCAA GCGGCGGTGC ACTTTCTGTC GACTTTAATG CAGGCTCTAT TCCACTGGGT
CAGTTCGATA TTCCCAACAC TGGCGGTTGG CAAAACTGGG TAACCGTTTC AAAAACAGTT
ACTTTAACTG CCGGCACCTA CGATATGGGC GTATTCGCCT CTACCGGCGG CTGGAACTTT
AACTGGATAG AAGTCACACC CGTTAATAAC GGTGGTGGCA ATGGCGGCGG TTCAGCCACG
TTCTTTCAAG CGGAAGACTA CAGCAACTAC TCCGACACCA CACCCGAAAA CATTGGCGGC
GCCTATCGCA ATGACGGTGT AGATATAGAA ACCACAAGCG ATGCCAACGG CGGCCACAAT
ATAGGCTGGA TGGAAAACGG CGAATGGCTT GCCTACGAAG GTTTATCTAT TCCCAGTAAC
GGCAACTACA TCATTAAAGC GCGTGTAGCT AGCCCCAACG GCGGCGCACT ATCGTTTGAT
TTAAACGGCG GCGGCCAAGT GCTTGGCACA ATGAACATAC CCGCTACTGG CGGTTGGCAA
AATTGGCAAA CCGTAGAATT GAGCACCAAC ATTAATGCCG GAACCTATAC GCTCGGCGCC
TTTGTTAGTA CTAGTGGCTT TAACCTAAAT TGGATAGAAG TCGTTGCCGG TGGCGACGGC
GGCAATAATG GTGGCGGTGG TGGCAACATC ACTTGGCGCG ATGAATTCGA CACAATCAAC
CGCGATGTTT GGAATTTTGA AACCGGTGGC GGCGGCTGGG GTAACAACGA ATTGCAATAC
TACACCGACG GCCAAAACGC TTCCATTCAG TTCGACCCGC AAGCCGGTAG TAATGTGTTA
GTTATCGAAG CCCGCAAAGA AACCGGTGGC CAATGTTGGT GGGGCGGCAA TTGCGGTTAC
ACCTCTAGCC GCATGAACAC GCGGTTTAAA AAATCGTTCC AATACGGCCG TATAGAAGCA
CGTATGAAGC TGCCGCGTAC CCAAGGTATT TGGCCAGCGT TTTGGATGCT AGGTGACAAC
TTTAATAATG TAGGCTGGCC TCAAGGTGGC GAACTAGACA TTATGGAGCA CGTAGGCACC
AACAATATCA CATCGGGTGC ATTGCACGGC CCAGGCTACA GCGGTAATAC GCCCATTACC
GGCCATTTGG AGCACGGTGC AAGCATTGAT TCTGGCTACC GTGTTTACGC AGTAGAATGG
GATACCAATG GTATTCGCTG GTTTGTTGAC GGCACCAACT TCTACAGCGT AGAAAAATGG
CAAGTGCAAC AGTACGGCGA ATGGGTTTAC GACCAACCTT TCTGGATACT GCTAAACCTA
GCGGTGGGAG GCAACTGGCC CGGCGACCCA GACCACGCCA ACTTTACTAC CCAACGTTTT
TACATTGACT ATGTGCGGGT GATTCAGTAA
 
Protein sequence
MIKTCKTTPA KWAAALSLGC ALLLPSGVNA ATFQAEDYSA FYDTTAGNTG GAYRNDNVDI 
EATNDNGGGY NVGWIDANEW LVYPGVNITT TGDYVINVRV ASASGGALSV DFNAGSIPLG
QFDIPNTGGW QNWVTVSKTV TLTAGTYDMG VFASTGGWNF NWIEVTPVNN GGGNGGGSAT
FFQAEDYSNY SDTTPENIGG AYRNDGVDIE TTSDANGGHN IGWMENGEWL AYEGLSIPSN
GNYIIKARVA SPNGGALSFD LNGGGQVLGT MNIPATGGWQ NWQTVELSTN INAGTYTLGA
FVSTSGFNLN WIEVVAGGDG GNNGGGGGNI TWRDEFDTIN RDVWNFETGG GGWGNNELQY
YTDGQNASIQ FDPQAGSNVL VIEARKETGG QCWWGGNCGY TSSRMNTRFK KSFQYGRIEA
RMKLPRTQGI WPAFWMLGDN FNNVGWPQGG ELDIMEHVGT NNITSGALHG PGYSGNTPIT
GHLEHGASID SGYRVYAVEW DTNGIRWFVD GTNFYSVEKW QVQQYGEWVY DQPFWILLNL
AVGGNWPGDP DHANFTTQRF YIDYVRVIQ