Gene Sde_0600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0600 
Symbol 
ID3965007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp751010 
End bp753421 
Gene Length2412 bp 
Protein Length803 aa 
Translation table11 
GC content51% 
IMG OID637919663 
Productglucan 1,4-alpha-glucosidase 
Protein accessionYP_526076 
Protein GI90020249 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3387] Glucoamylase and related glycosyl hydrolases 
TIGRFAM ID[TIGR01535] glucan 1,4-alpha-glucosidase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.782698 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.698783 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTAC AACGTTTAAT GACTCTATGC TCTGTGCTAG CTTTAACCGG CTTAGCGGGA 
TGCAATAACG ACAAAACCAG CCAAACTGAT CACACCAGCG CGCAAACTAC CGCGCCAGGC
GCCCCAGGCG CAGCCCCCAC TTGGGCTTAC TCCGGTAAAA CCGGCATTGG CACCAGCTAC
GAACAATATG TGGAAGGCCG CTACCAAGCA TCGGCCCCCA CCGGTAATGT CTCTAAAGTA
TGGTTCTCTG TCACTCAAGG CATACTTACC GAAACCATGT ACGGGCTTAT CCATGAAGCA
CAACTTAAGG ATATGCAATT TTTTATCCAA GGCCCCGATT TTTTACATTC AGAACGAGAC
GACACAGAAC ACCATATTGA ATACCTGCAT ACCGACGCTA AAGGCAACCC TCTTTCCTTA
GCGTATAAAT TGGTAAACAA AGACAAGCAG GGCCGTTATC AAATCGAAAA ACACATCGCC
ACCAACCCAG ATAACCAATC GGTGGTAATG AAGGTGATAT TCACCAGTAA TATTGATGGT
ATTACACCGC ACTTAGTCGC TAACCCGCAT ATCGCCAACA CAGGCATTAA CGATAAAGGT
TGGGTAGAAG ACAACACCCT CTATGCGAGC GATGGCAATT CGGCTATGGC AATTGCCCTA
AAAGGCAGCC CCATTATTGG CAGCGCGGGC TTTGTGGGCA CATCAGACCT ACCCACCGAT
TTAGCTGACG GCAAAGTAGA TTGGCAATAC AGCAGCACCG GCGAAACCAC TGGCAACGTA
AGCTTGGCAG CATCTCTACC AGAAATGGCA AAGGGCAGCG CCGAATGGGA AATAGCCCTA
GGCTTTGGCG ACTCGGCGGC TAACGCCAAC AAAGCGGCTC AAGCCTCGCT ACAAGCCGGC
TTTGCCAAGG TGCTGACCAA CTACAACGGT GAAGGCGATG CCGTGGGCTG GGAAGATTAC
CTTGCAAGCC TACCCAACTT ACCCGCCATG GCCGCACAAG CCACCGACGG CGGTAAACTC
GCCTACACCA GCGCCATGGT ATTAAAAGCA CAGGAAGACA AATCCCACGC GGGCGCCCTT
ATTGCCTCGC TCTCTAACCC ATGGGGCGAC ATAGTCCCTG CGGTTGAATC CTCCACCGGG
TACAAAGCGG TTTGGCCGCG CGACTTTTAT CAAGTAGCCA TGGCATTTTT GGCGTTGGGC
GATAACGAAA CCCCCAAAGT GGCATTTGAA TATTTGAAAA AAGTACAAGC CGGGCCAGAT
ATTGAAGGCT ACGAGGGTGC ACCTGGCTGG TTCTTACAAA AAACCCACGT TGACGGCACC
TTAGAATGGT ACGCCGTGCA ACTAGACCAA ACAGCCATGC CTATTATGCT GGGCTGGCGC
TTGTGGCAGG CGGGTATACT TAGCGATGCC GAAGCCAAGC ACTGGTACAC AGTAATGTTA
AAACCGGCGG CGGAGTTTCT AGCCGATGGT GGTGAAATAT CTCTAGGTTG GAACAAACGC
ACAATTACCC CACCCTATAC TCAACAAGAG CGCTGGGAAG AGCAAGAGGG TCACTCCCCC
TCTACTACTG CAGCCGTTAT TGCGGGCTTA GTAACAGCAG CCGAGTTTGC CAAATTTGCT
GGCGATAGCG AAGGCACAAC AAAATACCTC GCCAAAGCCG ATGAGTATCG CAGCAAGTTA
ATTCCGCGCA CTTATACCAC GCAAGGTAAC CTCAACAAGG CTCCATCTAA CGGCAAATAC
TTTTTACGCG TTAACTTAAA TGAAGACCCG AACGATCAAG GTAAATTGCT TGAGCGCAAC
GGCCAGATTG CATTGAACGA AAGCGACATT ATCGACCCAG GGTTTTTAGA GCTGGTGCGC
TACGGTGTAA CCGAAGCCAC GGATGAGCAC ATAACGGAAT CACTAGTAGA AATTGACGAC
CCCGCCCTGC CCGATTTCTT AAAAGTAAAA TACACGGTTA ATGTTAACGG TAAACAAGCT
GTTGGCTGGC GCCGTTACGG TGGCGACGGC TACGGCGAAA CCACTTCTAC CGGTGAAGGT
TACGGTCACG GCGGCACCAT GCACCCAGAC CAACGCGGCC GCATTTGGCC TTTCTTTACC
GGCGAGCGCG GCCACTACGA GTTGGCCTTA GCTAAAGCCG ACAACGGTGT TAGCGACGCA
GAGCTCACTA ACTTGCGCAA TATCTACGTA AACTCTATGG AAACATTCGC CAACGAAGGC
TTAATGTTAC CCGAGCAAGT GTGGGATGGC GTGGGCGATA ACAGCGCATA CAATTACCCT
ATAGGCACAG GTACCAACTC GGCTACACCA CTGGCTTGGA CCCACGCGGA ATACTTAAAG
CTTTTGCGCT CGCTAGCAGA TAAAGAAGTG TGGGATCACT ACACACCTGT TGCTAAGCGC
TATAAAAAAT AA
 
Protein sequence
MRLQRLMTLC SVLALTGLAG CNNDKTSQTD HTSAQTTAPG APGAAPTWAY SGKTGIGTSY 
EQYVEGRYQA SAPTGNVSKV WFSVTQGILT ETMYGLIHEA QLKDMQFFIQ GPDFLHSERD
DTEHHIEYLH TDAKGNPLSL AYKLVNKDKQ GRYQIEKHIA TNPDNQSVVM KVIFTSNIDG
ITPHLVANPH IANTGINDKG WVEDNTLYAS DGNSAMAIAL KGSPIIGSAG FVGTSDLPTD
LADGKVDWQY SSTGETTGNV SLAASLPEMA KGSAEWEIAL GFGDSAANAN KAAQASLQAG
FAKVLTNYNG EGDAVGWEDY LASLPNLPAM AAQATDGGKL AYTSAMVLKA QEDKSHAGAL
IASLSNPWGD IVPAVESSTG YKAVWPRDFY QVAMAFLALG DNETPKVAFE YLKKVQAGPD
IEGYEGAPGW FLQKTHVDGT LEWYAVQLDQ TAMPIMLGWR LWQAGILSDA EAKHWYTVML
KPAAEFLADG GEISLGWNKR TITPPYTQQE RWEEQEGHSP STTAAVIAGL VTAAEFAKFA
GDSEGTTKYL AKADEYRSKL IPRTYTTQGN LNKAPSNGKY FLRVNLNEDP NDQGKLLERN
GQIALNESDI IDPGFLELVR YGVTEATDEH ITESLVEIDD PALPDFLKVK YTVNVNGKQA
VGWRRYGGDG YGETTSTGEG YGHGGTMHPD QRGRIWPFFT GERGHYELAL AKADNGVSDA
ELTNLRNIYV NSMETFANEG LMLPEQVWDG VGDNSAYNYP IGTGTNSATP LAWTHAEYLK
LLRSLADKEV WDHYTPVAKR YKK