Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0600 |
Symbol | |
ID | 3965007 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 751010 |
End bp | 753421 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637919663 |
Product | glucan 1,4-alpha-glucosidase |
Protein accession | YP_526076 |
Protein GI | 90020249 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | [TIGR01535] glucan 1,4-alpha-glucosidase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.782698 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.698783 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCTTAC AACGTTTAAT GACTCTATGC TCTGTGCTAG CTTTAACCGG CTTAGCGGGA TGCAATAACG ACAAAACCAG CCAAACTGAT CACACCAGCG CGCAAACTAC CGCGCCAGGC GCCCCAGGCG CAGCCCCCAC TTGGGCTTAC TCCGGTAAAA CCGGCATTGG CACCAGCTAC GAACAATATG TGGAAGGCCG CTACCAAGCA TCGGCCCCCA CCGGTAATGT CTCTAAAGTA TGGTTCTCTG TCACTCAAGG CATACTTACC GAAACCATGT ACGGGCTTAT CCATGAAGCA CAACTTAAGG ATATGCAATT TTTTATCCAA GGCCCCGATT TTTTACATTC AGAACGAGAC GACACAGAAC ACCATATTGA ATACCTGCAT ACCGACGCTA AAGGCAACCC TCTTTCCTTA GCGTATAAAT TGGTAAACAA AGACAAGCAG GGCCGTTATC AAATCGAAAA ACACATCGCC ACCAACCCAG ATAACCAATC GGTGGTAATG AAGGTGATAT TCACCAGTAA TATTGATGGT ATTACACCGC ACTTAGTCGC TAACCCGCAT ATCGCCAACA CAGGCATTAA CGATAAAGGT TGGGTAGAAG ACAACACCCT CTATGCGAGC GATGGCAATT CGGCTATGGC AATTGCCCTA AAAGGCAGCC CCATTATTGG CAGCGCGGGC TTTGTGGGCA CATCAGACCT ACCCACCGAT TTAGCTGACG GCAAAGTAGA TTGGCAATAC AGCAGCACCG GCGAAACCAC TGGCAACGTA AGCTTGGCAG CATCTCTACC AGAAATGGCA AAGGGCAGCG CCGAATGGGA AATAGCCCTA GGCTTTGGCG ACTCGGCGGC TAACGCCAAC AAAGCGGCTC AAGCCTCGCT ACAAGCCGGC TTTGCCAAGG TGCTGACCAA CTACAACGGT GAAGGCGATG CCGTGGGCTG GGAAGATTAC CTTGCAAGCC TACCCAACTT ACCCGCCATG GCCGCACAAG CCACCGACGG CGGTAAACTC GCCTACACCA GCGCCATGGT ATTAAAAGCA CAGGAAGACA AATCCCACGC GGGCGCCCTT ATTGCCTCGC TCTCTAACCC ATGGGGCGAC ATAGTCCCTG CGGTTGAATC CTCCACCGGG TACAAAGCGG TTTGGCCGCG CGACTTTTAT CAAGTAGCCA TGGCATTTTT GGCGTTGGGC GATAACGAAA CCCCCAAAGT GGCATTTGAA TATTTGAAAA AAGTACAAGC CGGGCCAGAT ATTGAAGGCT ACGAGGGTGC ACCTGGCTGG TTCTTACAAA AAACCCACGT TGACGGCACC TTAGAATGGT ACGCCGTGCA ACTAGACCAA ACAGCCATGC CTATTATGCT GGGCTGGCGC TTGTGGCAGG CGGGTATACT TAGCGATGCC GAAGCCAAGC ACTGGTACAC AGTAATGTTA AAACCGGCGG CGGAGTTTCT AGCCGATGGT GGTGAAATAT CTCTAGGTTG GAACAAACGC ACAATTACCC CACCCTATAC TCAACAAGAG CGCTGGGAAG AGCAAGAGGG TCACTCCCCC TCTACTACTG CAGCCGTTAT TGCGGGCTTA GTAACAGCAG CCGAGTTTGC CAAATTTGCT GGCGATAGCG AAGGCACAAC AAAATACCTC GCCAAAGCCG ATGAGTATCG CAGCAAGTTA ATTCCGCGCA CTTATACCAC GCAAGGTAAC CTCAACAAGG CTCCATCTAA CGGCAAATAC TTTTTACGCG TTAACTTAAA TGAAGACCCG AACGATCAAG GTAAATTGCT TGAGCGCAAC GGCCAGATTG CATTGAACGA AAGCGACATT ATCGACCCAG GGTTTTTAGA GCTGGTGCGC TACGGTGTAA CCGAAGCCAC GGATGAGCAC ATAACGGAAT CACTAGTAGA AATTGACGAC CCCGCCCTGC CCGATTTCTT AAAAGTAAAA TACACGGTTA ATGTTAACGG TAAACAAGCT GTTGGCTGGC GCCGTTACGG TGGCGACGGC TACGGCGAAA CCACTTCTAC CGGTGAAGGT TACGGTCACG GCGGCACCAT GCACCCAGAC CAACGCGGCC GCATTTGGCC TTTCTTTACC GGCGAGCGCG GCCACTACGA GTTGGCCTTA GCTAAAGCCG ACAACGGTGT TAGCGACGCA GAGCTCACTA ACTTGCGCAA TATCTACGTA AACTCTATGG AAACATTCGC CAACGAAGGC TTAATGTTAC CCGAGCAAGT GTGGGATGGC GTGGGCGATA ACAGCGCATA CAATTACCCT ATAGGCACAG GTACCAACTC GGCTACACCA CTGGCTTGGA CCCACGCGGA ATACTTAAAG CTTTTGCGCT CGCTAGCAGA TAAAGAAGTG TGGGATCACT ACACACCTGT TGCTAAGCGC TATAAAAAAT AA
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Protein sequence | MRLQRLMTLC SVLALTGLAG CNNDKTSQTD HTSAQTTAPG APGAAPTWAY SGKTGIGTSY EQYVEGRYQA SAPTGNVSKV WFSVTQGILT ETMYGLIHEA QLKDMQFFIQ GPDFLHSERD DTEHHIEYLH TDAKGNPLSL AYKLVNKDKQ GRYQIEKHIA TNPDNQSVVM KVIFTSNIDG ITPHLVANPH IANTGINDKG WVEDNTLYAS DGNSAMAIAL KGSPIIGSAG FVGTSDLPTD LADGKVDWQY SSTGETTGNV SLAASLPEMA KGSAEWEIAL GFGDSAANAN KAAQASLQAG FAKVLTNYNG EGDAVGWEDY LASLPNLPAM AAQATDGGKL AYTSAMVLKA QEDKSHAGAL IASLSNPWGD IVPAVESSTG YKAVWPRDFY QVAMAFLALG DNETPKVAFE YLKKVQAGPD IEGYEGAPGW FLQKTHVDGT LEWYAVQLDQ TAMPIMLGWR LWQAGILSDA EAKHWYTVML KPAAEFLADG GEISLGWNKR TITPPYTQQE RWEEQEGHSP STTAAVIAGL VTAAEFAKFA GDSEGTTKYL AKADEYRSKL IPRTYTTQGN LNKAPSNGKY FLRVNLNEDP NDQGKLLERN GQIALNESDI IDPGFLELVR YGVTEATDEH ITESLVEIDD PALPDFLKVK YTVNVNGKQA VGWRRYGGDG YGETTSTGEG YGHGGTMHPD QRGRIWPFFT GERGHYELAL AKADNGVSDA ELTNLRNIYV NSMETFANEG LMLPEQVWDG VGDNSAYNYP IGTGTNSATP LAWTHAEYLK LLRSLADKEV WDHYTPVAKR YKK
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